Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0535.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)                      28   6.3  
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)                    28   8.4  

>SB_30809| Best HMM Match : Mab-21 (HMM E-Value=0)
          Length = 1710

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 499 VTSRTSPPHVCRXXXXXXXLSRSRCTWRRWQGEREVVLQRGGAARHVRRDH 651
           VT+R SPP           L RS    +  QGE+E   +   A+R  R+ H
Sbjct: 197 VTTRISPPPTGECGPEKVILIRSGAPPQPQQGEQEYCAEHAWASRDSRQKH 247


>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
          Length = 575

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
 Frame = +2

Query: 284 IIEIVLFVSMYXFIILXNVILKTVKAP*TAI-FKIYIXTLXRHXYR---------GNXFN 433
           II I++ + +   II+   I+ T+ A  TAI   I I  +    YR            F 
Sbjct: 325 IIIIIIIIIIIIIIIIIITIISTITATATAIVIVIIIIIIIISLYRVFCFVIVKKSLSFQ 384

Query: 434 VHKFSHVRFV--SLFILLQHFYPSLHHE 511
            H+   ++ +  + F+ LQ FY  L+HE
Sbjct: 385 FHRRDGLQMIMRAYFVKLQIFYEELNHE 412


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,573
Number of Sequences: 59808
Number of extensions: 224895
Number of successful extensions: 528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)