Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0535.Seq
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   8.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 294 LFSL*VCIXLLFXQT*F*RXLKHHKRPYLKSTFXH 398
           L S+ +C+ ++     F     H   P++K  F H
Sbjct: 317 LVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIH 351


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +3

Query: 294 LFSL*VCIXLLFXQT*F*RXLKHHKRPYLKSTFXH 398
           L S+ +C+ ++     F     H   P++K  F H
Sbjct: 317 LVSISICVTVVVLNVHFRSPQTHKMAPWVKRVFIH 351


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 69  FNHYTSFY*ANYLSLHYSL 125
           +N+Y + Y  NY  L+Y++
Sbjct: 337 YNNYNNNYNNNYKKLYYNI 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,821
Number of Sequences: 438
Number of extensions: 2404
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)