Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0534.Seq
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   1.9  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.4  
DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    22   4.4  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    22   4.4  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    22   4.4  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    22   4.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.7  

>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 140 TINPQDETVITQVAEGDK 193
           TINP+D  +I +  EG K
Sbjct: 154 TINPEDVILIRRTGEGSK 171


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 140 TINPQDETVITQVAEGDK 193
           TINP+D  +I +  EG K
Sbjct: 154 TINPEDVILIRRTGEGSK 171


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 551 PRHHWYGVIPRYYLTHTPTGSFMVNVRTSPSEGMVFPNIL 432
           P+ + Y  +P  Y++ T  G     V  +PS GM++   L
Sbjct: 823 PQQNPYMFLPVSYMSTTMAGVIYPPVIGTPSTGMMYKPFL 862


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 239 RYSPWLPWTLLNAASYCLS 295
           RY+  L W LL +  YC++
Sbjct: 302 RYATALDWFLLMSFGYCIA 320


>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 143 INPQDETVITQVAEGDKADI 202
           + PQ+ET++T V+    +D+
Sbjct: 116 VRPQNETILTTVSSEADSDV 135


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 143 INPQDETVITQVAEGDKADI 202
           + PQ+ET++T V+    +D+
Sbjct: 164 VRPQNETILTTVSSEADSDV 183


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 143 INPQDETVITQVAEGDKADI 202
           + PQ+ET++T V+    +D+
Sbjct: 164 VRPQNETILTTVSSEADSDV 183


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 143 INPQDETVITQVAEGDKADI 202
           + PQ+ET++T V+    +D+
Sbjct: 164 VRPQNETILTTVSSEADSDV 183


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 89  LFINNEWVDAVSKKTF 136
           LFINN +++ V   TF
Sbjct: 622 LFINNNYINLVRPNTF 637


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 325 YLAELETLDCGKPVKQSEEEVYFSASVLRYYAGKADK 435
           Y +E   L  GKP K+  E   +S    +Y+   A+K
Sbjct: 528 YFSEFAYL--GKPTKEDSEWPSYSRDEPKYFIFDAEK 562


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,592
Number of Sequences: 438
Number of extensions: 4154
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)