Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0533.Seq
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    31   0.23 
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    26   5.0  
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom...    26   6.6  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   8.7  

>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +1

Query: 139 SLTLMRRHSFSSSKRTTLKPSDKKLISTTRKPLTSS 246
           SL++ RR    SSKR ++K SD++  S+   PL+ S
Sbjct: 10  SLSIRRRQRRGSSKRISMKESDEESDSSENHPLSES 45


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -2

Query: 720 TASLATLESPSNVNVERGC---GSIVAGAP*TSMDVVVLNLLFTKVHAVAGVEFKVLEEC 550
           +A L+ L SP +   +  C    +I AG       V+  N++   +H +   +FK+ +E 
Sbjct: 335 SALLSLLSSPRDGVRKEACWTISNITAGNSSQIQYVIEANIIPPLIHLLTTADFKIQKEA 394

Query: 549 C 547
           C
Sbjct: 395 C 395


>SPCC584.14 |mug160||conserved eukaryotic
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 275 YGEEVTKDYQRS--YEVFARRVLGAAPMPFDKYTFMPSAMDFYQTSLRDPA 421
           + E V+ D   S  +++FA  V G +P+  + + F+    DF+     +PA
Sbjct: 53  FTESVSNDSFSSLPWQIFANSVAGNSPLQNEAWAFLMDNEDFFLPVPMNPA 103


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 551 HSSRTLNSTPATACTLVKRRLRTT 622
           HSS T N T +T  T   R  RTT
Sbjct: 141 HSSTTANRTTSTPTTTTARTTRTT 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,329
Number of Sequences: 5004
Number of extensions: 59114
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)