Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0533.Seq
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 3.0
SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 29 4.0
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 28 7.0
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79) 28 9.2
SB_36387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31) 28 9.2
>SB_801| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 402
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +2
Query: 260 DNADLYGEEVTKDYQRSYEVFARRVLGAAPMPFDKYTFMPSAMDFYQTSLRDPAFYQLYN 439
DN++ Y + + K Q YE FA+R L + D +PS Q +L Y LY+
Sbjct: 143 DNSEEYIDFLLKSEQSLYEDFAKRFLESGYFDCDLGKSVPSVHILRQDALSAIPIYALYH 202
Query: 440 R 442
+
Sbjct: 203 Q 203
>SB_1728| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 183 PFGGTERMSSHKCQG-ILLFHSFLRCASCSS 94
PF + SH C+G I H F RCA CS+
Sbjct: 221 PFCASAFTRSHHCRGHINSVHKFFRCAICSA 251
>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 29.1 bits (62), Expect = 4.0
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Frame = +2
Query: 326 RRVLGAAPMPFDK--YTFMPSAMDFYQTSLRDPAFYQLYNRIVEYIVEFKQYLKPY---- 487
R VL A P+ Y F +A+D ++T L+D Y + + + EF Q L Y
Sbjct: 182 RYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYIDYG 241
Query: 488 TQDKLYFMVSR*LMLKSIN*QHSSRTLNSTPATACTLVKRRLRTTTSMDV*GAPATIEPQ 667
Q + +VSR L S++ + +R+ ++ + T + + APA+ P+
Sbjct: 242 QQSREPPLVSRSLNQDSVSSRLINRSTGNSGTASPTFITSSANKHAQLPP-SAPAS--PK 298
Query: 668 PLSTLTLEG 694
P ST + EG
Sbjct: 299 P-STPSSEG 306
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = +3
Query: 24 YSPIKTGYYPLMLTKFTPFAQRPDYYNLHTEENYERVRFL 143
Y P KT L K T A RP Y NL + Y R R+L
Sbjct: 99 YVPWKTALNALSYLK-TVLANRPSYGNLQSCPKYNRFRYL 137
>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 826
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 186 GPFGGTERMSSHKCQGILLFHSFLRCASC 100
GP G +R S H+CQ +L+ + LRC C
Sbjct: 788 GPTDG-QRPSQHQCQILLMDSAKLRCLCC 815
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 427 SALQQNCGIHR*VQAILEALHSRQTLLYGVKITDVKVDKLTTFFENFEFDASNSVYFSKE 606
S LQ + G HR ++ E +H+ +LL TDV+V K +NF+ V ++E
Sbjct: 925 STLQYHTGPHRAIRGG-EVVHNAVSLLVSWAYTDVQVSKALMEQKNFKPWLQQLVLLARE 983
Query: 607 EI 612
+
Sbjct: 984 PV 985
>SB_26174| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 885
Score = 27.9 bits (59), Expect = 9.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 295 RLPTFLRSICAPCARCC 345
R+P F R +CA ARCC
Sbjct: 816 RMPEFRRELCAIFARCC 832
>SB_55700| Best HMM Match : tRNA_bind (HMM E-Value=0.79)
Length = 632
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 27 SPIKTGYYPLMLTKFTPFAQRPDYYNLHTE--ENYERVRFLDTYE 155
SP+ T P + K TP RP+ Y + + +E +R LD E
Sbjct: 118 SPLSTKKNPKVSFKNTPVRHRPERYKIELPQLDTWEEIRCLDEEE 162
>SB_36387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 27.9 bits (59), Expect = 9.2
Identities = 19/78 (24%), Positives = 36/78 (46%)
Frame = +2
Query: 260 DNADLYGEEVTKDYQRSYEVFARRVLGAAPMPFDKYTFMPSAMDFYQTSLRDPAFYQLYN 439
D+ YG ++ + + RS ++ R + DK+ F ++DF + D + L +
Sbjct: 35 DDTIHYGSDLEQHWWRSIDLLTRVGQAGIALNPDKFQFAERSVDFAGFRVSDTSIEPLLD 94
Query: 440 RIVEYIVEFKQYLKPYTQ 493
R + +V +Q L Y Q
Sbjct: 95 R-RQMLVRPRQPLTNYAQ 111
>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
Length = 690
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 379 RHESVLVEWHRRST*HTARKYFVRTLVI 296
++E V+ EW ++ T A K++VR L I
Sbjct: 635 KYEKVMEEWRKKMTHFLATKFYVRHLFI 662
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,913,791
Number of Sequences: 59808
Number of extensions: 427455
Number of successful extensions: 1124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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