Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0533.Seq
         (748 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56450.1 68418.m07046 mitochondrial substrate carrier family ...    29   4.3  
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ...    29   4.3  
At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P...    29   4.3  
At5g27060.1 68418.m03229 disease resistance family protein conta...    28   5.7  
At1g23710.1 68414.m02993 expressed protein                             28   5.7  
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu...    28   7.6  
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu...    28   7.6  
At5g07360.1 68418.m00840 amidase family protein low similarity t...    27   10.0 

>At5g56450.1 68418.m07046 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 330

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 607 PLY*STRCCWRRIQSSRRMLSIYR 536
           P+Y ST  CW++I  S  + S YR
Sbjct: 276 PMYRSTLDCWKKIYRSEGLASFYR 299


>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
           WD-40 repeats (PF00400); rab11 binding protein, Bos
           taurus, EMBL:AF117897
          Length = 905

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +1

Query: 160 HSFSSSKRTTLKPSDKKLISTTRKPLTSSATTAR*CRS---VWRRSHKRLPTFLRSICAP 330
           H+   ++R    PS   L+  +R      A++A   R    + + S  RL     +I AP
Sbjct: 150 HNSPVNQRVRRSPSMSVLLVRSRSDSDIEASSAEKQRKEEMLGKTSKSRLTRTASAIGAP 209

Query: 331 CARCCAY 351
           CAR C Y
Sbjct: 210 CARICPY 216


>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 783

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 84  QRPDYYNLHTEENYERVRFLDTYE-KTFVQFLQKDHFEAF 200
           Q+P   NLH EE Y+  R +   E  +F++FL+K    AF
Sbjct: 41  QKPICSNLHFEEYYKEQRIVKAQEWDSFMEFLRKPLPAAF 80


>At5g27060.1 68418.m03229 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-0B [Lycopersicon
           esculentum] gi|3894387|gb|AAC78593
          Length = 957

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 720 TASLATLESPSNV-NVERGCGSIVAGAP*TSMDVVVL-NLLFTKVHAVAGVEFKVLEECC 547
           T     + SPSN+  ++ G  + +   P +   +V L  L  + ++    V+F +     
Sbjct: 376 TLEFGNISSPSNLYELDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQGPVDFSIFSHLK 435

Query: 546 QFIDFNISYLDT 511
             +D NIS+L+T
Sbjct: 436 SLLDLNISHLNT 447


>At1g23710.1 68414.m02993 expressed protein
          Length = 295

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +1

Query: 154 RRHSFSSSKRTTLKPSDKKLISTTR--KPLTSSATTAR*CRSVWRRSHKRLPTFLRSICA 327
           R  S SSS  T  + +DKK+I+  +  K  TS+++  +   +  + +H++L    R++  
Sbjct: 207 RTRSSSSSSSTAAEENDKKVITEKKKGKEKTSTSSETKKKTTTTKSAHEKLYMRNRAMKE 266

Query: 328 PCARCCAYAIRQVHFHA*CNGL 393
                     +QV F    NGL
Sbjct: 267 EVKHRSYLPYKQVGFFTNVNGL 288


>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 459

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 132 VRFLDTYEKTFVQFLQKDHFEAFGQKIDFHDPKAINFVGNYGKIMQICMEKKSQKITN 305
           +R  + YE      +  +H E   QK +F        V NY  ++Q CM   S KI N
Sbjct: 51  IRIAEGYE--MASRVAVEHLERIAQKFEFD-------VNNYEPLVQTCMTTLSSKIVN 99


>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
           putative / TCP-1-epsilon, putative / chaperonin,
           putative identical to SWISS-PROT:O04450- T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
           thaliana]; strong similarity to SP|P54411 T-complex
           protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
           (TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
           TCP-1/cpn60 chaperonin family
          Length = 535

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +3

Query: 132 VRFLDTYEKTFVQFLQKDHFEAFGQKIDFHDPKAINFVGNYGKIMQICMEKKSQKITN 305
           +R  + YE      +  +H E   QK +F        V NY  ++Q CM   S KI N
Sbjct: 127 IRIAEGYE--MASRVAVEHLERIAQKFEFD-------VNNYEPLVQTCMTTLSSKIVN 175


>At5g07360.1 68418.m00840 amidase family protein low similarity to
           enantiomerase-selective amidase [Rhodococcus sp.]
           GI:152052; contains Pfam profile PF01425: Amidase
          Length = 659

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 196 PSDKKLISTTRKPLTSSATTAR*CRSVWRRSHKRLPTFLRSI 321
           PSD KL+ +   P   S    R C+++W+   +++    R I
Sbjct: 50  PSDSKLLCSRLLPCEPSIEMVRNCKNLWKLLDRKVSVPCRKI 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,249,551
Number of Sequences: 28952
Number of extensions: 297837
Number of successful extensions: 792
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)