Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0531.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    36   0.004
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   1.5  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   2.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   2.6  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    27   3.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   3.4  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    26   4.5  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.5  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    26   4.5  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    26   6.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   7.9  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   7.9  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   7.9  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   7.9  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 36.3 bits (80), Expect = 0.004
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 299 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 436
           VY+PD          Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +1

Query: 121 TIPTMETW-TPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVPPARSRTGAFNGP 297
           T P +ET  TP   A    TE      V+TI TTTP + A++ P +V      T A   P
Sbjct: 215 TTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTP-MEAMITP-TVETTTLPTAAMTTP 272

Query: 298 GVHT*SSP 321
              T ++P
Sbjct: 273 VEETTTTP 280


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 395 PIFSPTQATELADPTEKIELYSTTLVPVAKATEAPAAPNYQSRK 526
           PI + +  + L+ PT     YST  V + +   APA P+ +S K
Sbjct: 157 PILNSSDRSPLSLPTPYPVQYSTQPVSLPQPIAAPAPPSAESSK 200


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 196 AVTTILTTTPELWAVVWPRSV 258
           A T IL TTPE W VV  +SV
Sbjct: 386 AETQILVTTPEKWDVVTRKSV 406


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 109 KRIPTIPTMETWTPFPTARAIVTE 180
           K IPT PT E+  PFP+  A  T+
Sbjct: 286 KSIPTTPTGESLWPFPSENANKTQ 309


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVP 261
           T+   TP+PT     T   +  +VTT LT  P    V+    VP
Sbjct: 269 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 312



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVP 261
           T+   TP+PT     T   +  +VTT LT  P    V+    VP
Sbjct: 347 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 390



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVP 261
           T+   TP+PT     T   +  +VTT LT  P    V+    VP
Sbjct: 503 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 546



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVP 261
           T+   TP+PT     T   +  +VTT LT  P    V+    VP
Sbjct: 581 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEVP 624



 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 130 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSVP 261
           T+   TP+PT     T   +  +VTT LT  P    V+    +P
Sbjct: 425 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVIDTVEIP 468


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/50 (22%), Positives = 25/50 (50%)
 Frame = +3

Query: 150 LSYGSGDSNRGGLVMSRYYNPYYNPRAVGGGMAAFCTASPKPHRRLQRAR 299
           +++GSG++N G L  +++    Y P  +  G      + P  +  L++ +
Sbjct: 519 VTFGSGNTNIGSLRQTKFKQSNYTPPELNDGSRQHRPSRPSKNPSLKKKK 568


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +3

Query: 264 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 404
           S   H    +    + +++   +P+P  YR    +  TLSN++T  S
Sbjct: 45  SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 505 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 416
           +G  FG+  N   +GG  F + SG   FG+
Sbjct: 64  NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +3

Query: 126 PYYGNVDSLSYGSGDSNRGGLVMSRYYNPYYNPRAVGGGMAAFCTASPKP 275
           P  G +++L   +G      L M   YNPY  P A       + +A PKP
Sbjct: 249 PPNGGMEALFSAAGHEEIDLLKMMLDYNPYRRPTAQQALEHHYFSALPKP 298


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -1

Query: 263 GGTERGHTTAHSSGVVVRIVVTAHDQASSVTIA 165
           GG +R  +  H+S  +V I+V +HD AS+   A
Sbjct: 255 GGHKRLSSRNHNSQPLVCILVGSHDHASAAVAA 287


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 338 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 466
           TS+ PQ ++ +Y     +  + S T+  +  + T K++  S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
 Frame = +2

Query: 338 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIEL----YSTTLVPVAKATEAPAA 505
           T+Y PQ     +Y   P +    P+ +    D +   +     Y     PV+  + AP++
Sbjct: 345 TAYAPQSLRYAHYNYLPYS---RPSVSNGFDDDSSSSDFAHFRYQRRSRPVSPCSTAPSS 401

Query: 506 PNYQSRKYS 532
           P + +R +S
Sbjct: 402 PTFSTRSFS 410


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 383 QPENPIFSPTQATELADPTEKIELYSTTLVPVAKATEAPAAPNYQS 520
           +  +PI    +A     PT  +  YST     A+ TE+P  P   S
Sbjct: 385 ETNSPIIENKEANNFLAPTSNVPAYSTP----ARPTESPPPPPISS 426


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +2

Query: 356 QENEVYYPQQPENPIFSPTQATELADPTE 442
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,574
Number of Sequences: 5004
Number of extensions: 55499
Number of successful extensions: 214
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)