Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0527.Seq
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    67   2e-12
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    66   5e-12
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    65   7e-12
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    29   0.76 
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    25   9.4  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 28/45 (62%), Positives = 36/45 (80%)
 Frame = +3

Query: 372 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 506
           + RK++QL RL QINNGVFV+ NKAT  ML++ EPY+ +G PNLK
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLK 150



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 29/48 (60%), Positives = 34/48 (70%)
 Frame = +1

Query: 256 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 399
           ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 67  EREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 28/49 (57%), Positives = 39/49 (79%)
 Frame = +2

Query: 488 GIPQLKEVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLI 634
           GIP LK VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +EDLI
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLI 193



 Score = 31.9 bits (69), Expect = 0.082
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 86  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 250
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  EYR
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYR 64


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 26/49 (53%), Positives = 40/49 (81%)
 Frame = +2

Query: 488 GIPQLKEVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLI 634
           GIP L  VREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+I
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDII 191



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 28/44 (63%), Positives = 34/44 (77%)
 Frame = +3

Query: 372 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNL 503
           ++RKVL+L RL +INN VFVR NKA   MLRI EPY+ +G PNL
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNL 147



 Score = 52.0 bits (119), Expect = 7e-08
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +1

Query: 253 QERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 399
           +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 64  RERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 31.5 bits (68), Expect = 0.11
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 107 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIR 256
           PE +LK            ++  + ++ +  K ++E FKRAE ++  YR R
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQR 64


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 29/49 (59%), Positives = 39/49 (79%)
 Frame = +2

Query: 488 GIPQLKEVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLI 634
           GIP  K VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VEDLI
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLI 192



 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 28/48 (58%), Positives = 35/48 (72%)
 Frame = +1

Query: 256 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 399
           ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 66  EREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 61.7 bits (143), Expect = 9e-11
 Identities = 25/45 (55%), Positives = 34/45 (75%)
 Frame = +3

Query: 372 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 506
           + RK++QL RL QINNG+FV+ NKA   ML++ EPY+ +G PN K
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHK 149



 Score = 31.9 bits (69), Expect = 0.082
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 107 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 250
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYR 63


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 491 IPQLKEVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNII 616
           +P+LK  REL+ K+   +     +   SN I+EK L  ++II
Sbjct: 422 LPKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDII 463


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
 Frame = +2

Query: 473 ALHCLGI-PQLKEVRELVYKRGFAKL------SGQRIPITSNSIVEKRLHKHNIICVEDL 631
           A+H  G+ P +KE+ E++++RG  K+          + + + S+V     KH+     DL
Sbjct: 617 AVHHGGLLPIIKEIVEILFQRGLVKVLFATETFAMGVNMPAKSVVFSGTQKHDGRNFRDL 676

Query: 632 IP 637
           +P
Sbjct: 677 LP 678


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,114
Number of Sequences: 5004
Number of extensions: 50887
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)