Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0527.Seq
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       84   8e-17
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)               28   7.5  
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)                   28   7.5  
SB_24319| Best HMM Match : DUF1279 (HMM E-Value=0.58)                  27   9.9  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 38/45 (84%), Positives = 42/45 (93%)
 Frame = +3

Query: 372 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 506
           +VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPNLK
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLK 145



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 33/49 (67%), Positives = 38/49 (77%)
 Frame = +2

Query: 488 GIPQLKEVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLI 634
           G P LK VREL+YKRG+ K+  QR+ +T NSIVEK L KH IICVEDLI
Sbjct: 140 GYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLGKHGIICVEDLI 188



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/49 (59%), Positives = 36/49 (73%)
 Frame = +1

Query: 253 QERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 399
           +E DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPK  K    L
Sbjct: 61  KEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +2

Query: 80  EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIRN 259
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR + 
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 260 V 262
           V
Sbjct: 63  V 63


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 278 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 415
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_32431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 322

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 643 ISWNEVLNTDNVVFMEPLLNNAVGSDWYTL 554
           + WN  L  + VV +    N AVG +WY +
Sbjct: 285 LPWNTALTQELVVKVTSSYNTAVGQNWYEM 314


>SB_32430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 643 ISWNEVLNTDNVVFMEPLLNNAVGSDWYTL 554
           + WN  L  + VV +    N AVG +WY +
Sbjct: 300 LPWNTALTQELVVKVTSSYNTAVGQNWYEM 329


>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
          Length = 310

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 331 PIWLPRERSSCHDCVLVWLV*FHHVPD 251
           P+  P E S C  CVL WL  ++  P+
Sbjct: 28  PLMAPCEHSYCSACVLGWLTHYNTCPE 54


>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
          Length = 147

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 235 RQGIPHQERDEIRLARQ---ARNRGNYYVPGEAKLAFVIRIRGINQVSPKS 378
           ++GIP  ++  I   +Q    R   +Y +  E+ L  V+R+RG  Q+S K+
Sbjct: 33  KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQISVKA 83


>SB_24319| Best HMM Match : DUF1279 (HMM E-Value=0.58)
          Length = 383

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 298 HDCVLVWLV*FHHVPDAVFLDVLFSPLEDFPLLLDGRRT 182
           HD + V+     H P + F D +F  L +  L L GR T
Sbjct: 317 HDALRVYHQIARHQPQSFFYDRVFKQLRELHLRLHGRPT 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,801,910
Number of Sequences: 59808
Number of extensions: 375059
Number of successful extensions: 778
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)