Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0527.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    77   1e-14
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    31   0.70 
AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      29   2.8  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    29   2.8  
Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF016445-1|AAC69057.2|  367|Caenorhabditis elegans Serpentine re...    28   6.6  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = +3

Query: 378 RKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 506
           RK LQ+ RLRQINNGVFV+LNKAT+ +LRI EPY+AWGYPN K
Sbjct: 102 RKALQILRLRQINNGVFVKLNKATLPLLRIIEPYVAWGYPNNK 144



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 28/48 (58%), Positives = 37/48 (77%)
 Frame = +2

Query: 488 GIPQLKEVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDL 631
           G P  K + +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+EDL
Sbjct: 139 GYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICLEDL 186



 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 23/43 (53%), Positives = 34/43 (79%)
 Frame = +1

Query: 256 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVK 384
           +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK  K
Sbjct: 61  QKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRK 103



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 22/55 (40%), Positives = 31/55 (56%)
 Frame = +2

Query: 86  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 250
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYR 58


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 494 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNFTDFGE 366
           ++PS  RL    H H+ L Q +++ I    Q K++Q F   GE
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFFVVCGE 538


>AF098986-5|AAC67426.1|  671|Caenorhabditis elegans Hypothetical
           protein C36C9.4 protein.
          Length = 671

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -1

Query: 618 QIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTSLSWGIPKQCKARRYVAYSQ*P 442
           +I++CL +L F T+  E   +   L +    +YTNS+ S  +       A  +++ +   
Sbjct: 417 RIVICLVALSFDTLSPEARVVIVGLGMLGNEMYTNSKASCLFEQQMAAGAAWFLSEANVE 476

Query: 441 YSDVQTHHCLFGAV*TVAELYG 376
           Y  ++ H  LF  +  + EL+G
Sbjct: 477 YLSIKAHEVLF-HLPEINELFG 497


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical protein
            C05C12.3 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 306  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 440
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 306  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 440
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1346 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1390


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1681

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 306  LRSRGSQIGICHPNPWYQPSFTEVRKVLQLFRLRQINNGVFVRLN 440
            L  R  Q+      PW  P FT +  V+ LF+L + ++ +F R N
Sbjct: 1333 LFERYGQVMEYESTPWLPPPFTIIYHVIWLFKLIKSSSRMFERKN 1377


>Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical
           protein T08G3.8 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -1

Query: 246 YSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPLT 67
           YS+     L+K+S +FL  + + +S   + ++ R  ++++ ++        FL+   PLT
Sbjct: 24  YSMPTVYILIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQ-IACFFNVCIKFLIFRIPLT 82

Query: 66  G 64
           G
Sbjct: 83  G 83


>AF016445-1|AAC69057.2|  367|Caenorhabditis elegans Serpentine
           receptor, class w protein132 protein.
          Length = 367

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 600 WSLFSTMLLEVIGIRCPLSLANPRLYTNSRT-SLSWGIPKQC 478
           W LFS + +  + IR P+S  N +L  +S + S+ +G+   C
Sbjct: 130 WLLFSIVTIRTLVIRNPMSHKNEKLSNSSASFSVIFGVSGTC 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,769,780
Number of Sequences: 27780
Number of extensions: 280148
Number of successful extensions: 718
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)