Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0526.Seq
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   1.8  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    27   2.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   2.3  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   3.1  
SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyce...    26   4.0  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    26   5.3  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.3  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   5.3  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    26   5.3  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   5.3  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    25   9.3  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   9.3  

>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 359 HSPSWPSEVWHERSSFVETPGTRVDGALSAT 267
           HS ++P+E+W  R    E P  + D  L+ T
Sbjct: 45  HSLTFPTEIWETRDGLFEEPVGKGDSHLNHT 75


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 568 PSGFRQPQPWFIGRVS-GLGVWDLLAVSGREPD 473
           P G   P+P    ++S G  VWDL+   GR+ D
Sbjct: 57  PDGIATPEPETKKKLSFGARVWDLICSPGRQHD 89


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 338 PTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTST 466
           P     + +T TC+ RP   +S    TS++ ES  +    TST
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 545 ALVHWQGLRPGRVGSVGGLWSGARQQTSM 459
           A+ +W G++P   G +GGL +G   QT +
Sbjct: 10  AIDYWNGVQPTVDGMLGGLGTGRIPQTDV 38


>SPAC4F10.03c |||2'-O-ribose methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 187 PGIWSRSLIRSSHQRXPDAIAAGTQPSV--ADRAPSTLVPGVST 312
           PG WS+ L R   +    +IAA  +P +   D  P   + GV T
Sbjct: 52  PGSWSQVLSRELLKNIDTSIAADEKPMIVAVDLQPMAPIDGVCT 95


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +1

Query: 247 AAGTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQE-GECVNYYLCNAANNTIITDGTNVI 423
           A G + ++  + P   +  + T+  +S ++ D    G+C  +YL  A +N  I   + ++
Sbjct: 122 AIGVEEALQRQYPENPIFSLITHTPVSQRSVDEFFFGDCAPFYLAPAGSNLEIDQLSRLV 181

Query: 424 DIRVGSGPCSSYID 465
           +I  G    S  +D
Sbjct: 182 EILEGGEISSEILD 195


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +2

Query: 278 GLHRPWCL 301
           GLHRPWCL
Sbjct: 685 GLHRPWCL 692


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 390  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 274
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 420 DVCSVSDNGVIGRIAQVIVDALPFLAV 340
           ++  +  NG++ RI QV+ D L +L++
Sbjct: 304 EIDEIGVNGIVERIKQVVGDTLVYLSI 330


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 390  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 274
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +1

Query: 187 PGIWSRSLIRSSHQRXPDAIAAGTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQE 351
           P ++  S    SH+   DA    T PSVA   PS +  G S     S   S  +E
Sbjct: 60  PHVFQHSQSPLSHK---DASLLATMPSVASSNPSLISSGSSQTGSPSQSLSSNKE 111


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 206 H*SDLHISEXPTQLQPARSLVSLIGLHRPW 295
           H    HIS   T  Q   SL+ ++GLH P+
Sbjct: 39  HSIPFHISTHLTSCQANISLLKIVGLHCPF 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,206
Number of Sequences: 5004
Number of extensions: 49855
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)