Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0526.Seq
         (645 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_49716| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28)                   29   2.4  
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         29   2.4  
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)                       29   2.4  
SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)                28   7.5  
SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.5  
SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)                   28   7.5  
SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_2152| Best HMM Match : EGF (HMM E-Value=0)                          27   9.9  

>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 560 VPPAAALVHWQGLRPGRVGSVGGLWSGARQQTSMYDEHGPL 438
           +P  A L+H Q L    + +VG + +G  +QT +   HG L
Sbjct: 848 LPALALLIHHQDLDTAALRAVGNIVTGTDEQTQVVLNHGAL 888


>SB_49716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 635 DHPGNSRTWSRRQRRPWSRKATPVRV 558
           DHP NS TW   +  P +R  TP+ V
Sbjct: 53  DHPTNSLTWLTVKHSPTTRTLTPITV 78


>SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28)
          Length = 234

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 560 VPPAAALVHWQGLRPGRVGSVGGLWSGARQQTSMYDEHGPLPTLI 426
           +P  A L+H Q L    + +VG + +G  +QT    + G +P +I
Sbjct: 185 LPALALLIHHQDLDTAALRAVGNIVTGTDEQTQEVIDAGLIPLII 229


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
 Frame = -2

Query: 611 WSRRQRRPWSRKAT---PVRVPPAAALVHWQGLRPGRVGSVGGLWSGAR-QQTSMYDEHG 444
           W RR+  PW R +    P++  P    V   G  P R G +     G +   T+M DE  
Sbjct: 658 WDRRRSNPWPRPSAIRWPLQYDPLKDTVVPSGNYPDRPGKIARARGGLKGSVTAMTDEEQ 717

Query: 443 PLPTL 429
             P L
Sbjct: 718 IEPRL 722


>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 514

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 459 HRRLLSGSRPETANRSHTPRPETLPMNQGCGWRNPDGRCFPGP 587
           H R  S + P    RS +PR E++   +   + +P  + FP P
Sbjct: 85  HSRSKSRTPPRHRRRSRSPRRESIDRKRRSSYESPSPQPFPSP 127


>SB_12442| Best HMM Match : zf-MYND (HMM E-Value=0.0028)
          Length = 3809

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 238 DAIAAGTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQEGECVNYYLCNA 384
           D  A G + S A+         +S ND+ SC  SDG  G+    +  NA
Sbjct: 766 DETACGVKGSSAEIESRRTGKEISENDNASCFPSDGVSGDSTQQHGQNA 814


>SB_22798| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 3255

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 414  CSVSDNGVIGRIAQVIVDALPFLAVGGLARKVIVRR 307
            C+VS+N V+G I   ++   P L  GG+    I+ R
Sbjct: 1903 CNVSENAVVGAIIAELLAVDPDLGTGGVVSYRILTR 1938


>SB_20062| Best HMM Match : Tsg101 (HMM E-Value=0.41)
          Length = 686

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 483 RPETANRSHTPRPETLPMNQGCGWRNPD 566
           RP T+  SHT   E  P  Q  G R PD
Sbjct: 407 RPTTSRPSHTSATEYYPDRQAPGHRTPD 434


>SB_8102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 690

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 35  SRTRKILKPVTSRRALRVRYC*CDVLRIISKDVQASIHRLSRV 163
           S+T+K  +PV+ R++        DV R++  D   ++HR + V
Sbjct: 388 SKTQKNAEPVSERQSASRSTARADVKRLLETDTHVAMHRDTHV 430


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = -3

Query: 631  IQGTLELGLAVNVARGPGKQRPSGFRQPQPWFIGRVSGLGV----WDLLAVSGREPDSRR 464
            ++G  E G A  +  G   +    FRQ   W  G +  L V    ++LLA S R PD +R
Sbjct: 1822 LEGMSE-GTAEEMTSGLFDEESEMFRQAATWSAGALGILTVICLLYELLARSRRTPDPKR 1880

Query: 463  RCTMNTG 443
                 TG
Sbjct: 1881 YDYSKTG 1887


>SB_41658| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 316 DDLSCQTSDGQEGECVNY 369
           DD+ CQ++DG + +C +Y
Sbjct: 104 DDIRCQSADGPQRKCASY 121


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 513  PRPETLPMNQGCGWRNPDGRCFPGPRATLTA 605
            P PE  P +    +R PDGR FPG R  + A
Sbjct: 1565 PYPEPRP-DAWIEYRTPDGRVFPGLRPEVIA 1594


>SB_2152| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1603

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 21/79 (26%), Positives = 27/79 (34%)
 Frame = -1

Query: 561  GSASRSPGSLAGSPAWACGICWRSLVGSQTADVDVR*TRATADSYIDDVCSVSDNGVIGR 382
            GS       L  S  W  G  W S         ++R T A A+     VC V +N     
Sbjct: 1074 GSRGALASKLKSSTLWWNGPSWLSETEEGWPKTEIRKTTAGAEEEKSTVCMVVNNERQAE 1133

Query: 381  IAQVIVDALPFLAVGGLAR 325
                ++D   F   G L R
Sbjct: 1134 DISAVIDINRFSDCGKLFR 1152


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,261,701
Number of Sequences: 59808
Number of extensions: 440597
Number of successful extensions: 1373
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)