Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0524.Seq
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 241 5e-65
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 241 7e-65
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 241 7e-65
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 131 7e-32
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 107 9e-25
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 67 2e-12
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 35 0.008
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.032
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 32 0.055
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.097
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 31 0.13
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 31 0.13
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.52
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 29 0.68
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 29 0.68
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.6
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 3.6
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb... 25 6.3
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 25 8.4
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 241 bits (590), Expect = 5e-65
Identities = 121/185 (65%), Positives = 137/185 (74%)
Frame = +3
Query: 42 MGKEKTHINIVVIXXXXXXXXXXXXHLIYKCGGIDKRTIEKFEKEAQEMGKXSFKXXLGI 221
MGKEK HIN+VVI HLIYKCGGIDKRTIEKFEKEA E+GK SFK +
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 222 GQTKG*AXREYTIDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGT 401
+ K R TIDIALWKFET Y VT+IDAPGH DFIKNMITGTSQADCAVLI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGT 120
Query: 402 GEFEAGISKNGQTREHALLAFTLGVKTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKK 581
GEFEAGISK+GQTREHALLA+TLGVK + +T +S+ RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 582 IGYNP 596
+G+NP
Sbjct: 179 VGFNP 183
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 241 bits (589), Expect = 7e-65
Identities = 120/185 (64%), Positives = 137/185 (74%)
Frame = +3
Query: 42 MGKEKTHINIVVIXXXXXXXXXXXXHLIYKCGGIDKRTIEKFEKEAQEMGKXSFKXXLGI 221
MGKEK HIN+VVI HLIYKCGGIDKRTIEKFEKEA E+GK SFK +
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 222 GQTKG*AXREYTIDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGT 401
+ K R TIDIALWKFET Y VT+IDAPGH DFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 402 GEFEAGISKNGQTREHALLAFTLGVKTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKK 581
GEFEAGISK+GQTREHALLA+TLGVK + +T +S+ RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 582 IGYNP 596
+G+NP
Sbjct: 179 VGFNP 183
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 241 bits (589), Expect = 7e-65
Identities = 120/185 (64%), Positives = 137/185 (74%)
Frame = +3
Query: 42 MGKEKTHINIVVIXXXXXXXXXXXXHLIYKCGGIDKRTIEKFEKEAQEMGKXSFKXXLGI 221
MGKEK HIN+VVI HLIYKCGGIDKRTIEKFEKEA E+GK SFK +
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 222 GQTKG*AXREYTIDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGT 401
+ K R TIDIALWKFET Y VT+IDAPGH DFIKNMITGTSQADCA+LI+ GT
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGT 120
Query: 402 GEFEAGISKNGQTREHALLAFTLGVKTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSYIKK 581
GEFEAGISK+GQTREHALLA+TLGVK + +T +S+ RFEEI KE S++IKK
Sbjct: 121 GEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKK 178
Query: 582 IGYNP 596
+G+NP
Sbjct: 179 VGFNP 183
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 131 bits (317), Expect = 7e-32
Identities = 70/183 (38%), Positives = 106/183 (57%), Gaps = 3/183 (1%)
Frame = +3
Query: 54 KTHINIVVIXXXXXXXXXXXXHLIYKCGGIDKRTIEKFEKEAQEMGKXSFKXXLGIGQTK 233
K H+NIV I ++++ G +DKRT+EK E+EA+E GK S+ + T
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 234 G*AXREYTIDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTGEFE 413
+ T+++ FET +++DAPGH ++ NMI G SQAD VL+++A GEFE
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFE 355
Query: 414 AGISKNGQTREHALLAFTLGVKTAHRRSKQNGSTEP--PYSEPRFEEIKKEVSSYIKKI- 584
AG + GQTREHA+LA T G+ H N EP +SE R++E ++S +++++
Sbjct: 356 AGFERGGQTREHAVLARTQGIN--HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA 413
Query: 585 GYN 593
GYN
Sbjct: 414 GYN 416
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 107 bits (258), Expect = 9e-25
Identities = 66/180 (36%), Positives = 92/180 (51%), Gaps = 1/180 (0%)
Frame = +3
Query: 54 KTHINIVVIXXXXXXXXXXXXHLIYKCGGIDKRTIEKFEKEAQEMGKXSFKXXLGIGQTK 233
K +++VV ++++ G I+ R+++K EA GK SF + T+
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 234 G*AXREYTIDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTGEFE 413
R T+D+A FE+ I DAPGH DFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 414 AGISKNGQTREHALLAFTLGVKTAHRRSKQNGSTEPPYSEPRFEEIKKEVSSY-IKKIGY 590
G +NGQTREHA L LG+ + N +SE RF+EIK VS + IK +G+
Sbjct: 295 RGFLENGQTREHAYLLRALGI--SEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGF 352
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 67.3 bits (157), Expect = 2e-12
Identities = 44/130 (33%), Positives = 66/130 (50%)
Frame = +3
Query: 183 EMGKXSFKXXLGIGQTKG*AXREYTIDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTS 362
++G+ SF I + R TI A ++ET+ + +D PGH D+IKNMITG +
Sbjct: 79 DLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAA 138
Query: 363 QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKTAHRRSKQNGSTEPPYSEPRF 542
D A+++V+A G+ QTREH LLA +GVK + EP E
Sbjct: 139 TMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVE 191
Query: 543 EEIKKEVSSY 572
E+++ +S Y
Sbjct: 192 MEMRELLSEY 201
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 35.1 bits (77), Expect = 0.008
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 279 FETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 449
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.1 bits (72), Expect = 0.032
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 279 FETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTG 404
F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 32.3 bits (70), Expect = 0.055
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = +3
Query: 192 KXSFKXXLGIGQTKG*AXREYTIDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTSQAD 371
+ F L + + +G + T + ++ + Y + +ID PGH DF ++ + +
Sbjct: 91 RNQFLDKLEVERRRGITVKAQTCSM-IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACE 149
Query: 372 CAVLIVAAGTG 404
+L+V A G
Sbjct: 150 GCILLVDASQG 160
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.5 bits (68), Expect = 0.097
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 297 YVTIIDAPGHXDFIKNMITGTSQADCAVLIVA 392
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 31.1 bits (67), Expect = 0.13
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 294 YYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTG 404
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 31.1 bits (67), Expect = 0.13
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 246 REYTIDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTG 404
R TI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.1 bits (62), Expect = 0.52
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 306 IIDAPGHXDFIKNMITGTSQADCAVLIV 389
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 294 YYVTIIDAPGHXDFIKNMITGTSQADCAVLIV 389
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 28.7 bits (61), Expect = 0.68
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 294 YYVTIIDAPGHXDFIKNMITGTSQADCAVLIV 389
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 309 IDAPGHXDFIKNMITGTSQADCAVLIV 389
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +3
Query: 249 EYTIDIALWK--FETSXYYV--TIIDAPGHXDFIKN 344
E T++I + K E +++ T+ID PG DFI N
Sbjct: 68 EKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 178
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 438 TREHALLAFTLGVKTAHRRSKQNGSTEPPYSEPR 539
T + +L+F + H+RS +GST S P+
Sbjct: 78 TTRNIMLSFPSNEEQGHQRSASHGSTSSATSTPK 111
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 183 PGPPSRTSRWYVCQYHHIC 127
P PP +T + Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,773
Number of Sequences: 5004
Number of extensions: 40781
Number of successful extensions: 128
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -