Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0524.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          134   7e-32
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              96   2e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 85   3e-17
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                66   2e-11
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.6  
SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)                30   1.6  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    29   2.9  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              29   3.8  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     29   3.8  
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               28   6.6  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   8.7  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  134 bits (323), Expect = 7e-32
 Identities = 64/159 (40%), Positives = 101/159 (63%), Gaps = 2/159 (1%)
 Frame = +3

Query: 126 YKCGGIDKRTIEKFEKEAQEMGKXSFKXXLGIGQTKG*AXREYTIDIALWKFETSXYYVT 305
           Y  G +DKRT+EK+E+EA+E  + ++     +   +    +  T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 306 IIDAPGHXDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKTA 485
           ++DAPGH  F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA T GVK  
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVK-- 283

Query: 486 HRRSKQNGSTEP--PYSEPRFEEIKKEVSSYIKKIGYNP 596
           H     N   +P   ++E R+EEIK +++ ++KK+G+NP
Sbjct: 284 HLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 43/73 (58%), Positives = 55/73 (75%)
 Frame = +3

Query: 258 IDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 437
           +D+ L +F+T    +T++DAPGH DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 438 TREHALLAFTLGV 476
           TREHA+L  +LGV
Sbjct: 61  TREHAILVRSLGV 73


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 41/60 (68%), Positives = 44/60 (73%)
 Frame = +3

Query: 186 MGKXSFKXXLGIGQTKG*AXREYTIDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTSQ 365
           MGK SFK    + + K    R  TIDIALWKFET  YYVT+IDAPGH DFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 32/49 (65%), Positives = 34/49 (69%)
 Frame = +3

Query: 42  MGKEKTHINIVVIXXXXXXXXXXXXHLIYKCGGIDKRTIEKFEKEAQEM 188
           M KEK HINIVVI            HLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 VTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTG 404
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 276 KFETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIV 389
           +F+     + IID PGH  F      G+S  D A+L+V
Sbjct: 672 EFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_6930| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 506

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +1

Query: 451 PCSLSPSVSKQLIVGVNKMVPLNHHTV--SPDLRKSRRKYPHTSRRL 585
           PC   P++ K+++ G N     NH  +   P L +  ++ P  SR +
Sbjct: 181 PCCTLPAIDKKMVAGCNTPTTANHDKIYGVPTLEEIGQEVPEESREV 227


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 294 YYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTG 404
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 309 IDAPGHXDFIKNMITGTSQADCAVLIVA 392
           +D PGH   +  M+ G +  D A+L++A
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 300 VTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTG 404
           + I+D PGH DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +3

Query: 255 TIDIALWKFETSXYYVTIIDAPGHXDFIKNMITGTSQADCAVLIVAA 395
           T  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 125 TQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +3

Query: 300 VTIIDAPGHXDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 443
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,026
Number of Sequences: 59808
Number of extensions: 316503
Number of successful extensions: 800
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)