Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0523.Seq
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5WLI8 Cluster: Cation-transporting ATPase; n=1; Bacill...    40   0.039
UniRef50_UPI00006CB0AF Cluster: hypothetical protein TTHERM_0024...    34   3.4  

>UniRef50_Q5WLI8 Cluster: Cation-transporting ATPase; n=1; Bacillus
           clausii KSM-K16|Rep: Cation-transporting ATPase -
           Bacillus clausii (strain KSM-K16)
          Length = 862

 Score = 40.3 bits (90), Expect = 0.039
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = +3

Query: 108 FKIVLEYLSNRNMNKFYCCFIGIS*TPFHSAYLVTHTMTKFHNYILAFCFKL*KLITIVI 287
           +K     + NR+MN      +G S   F+S YL   ++  + N++     ++   + IV+
Sbjct: 205 YKSAYSAIKNRSMNMDVLVALGTSAAYFYSVYLAFQSLATYTNHVRLLDIEIILAMVIVV 264

Query: 288 PIFMVQIMFSWK*WNYDFL 344
             F + +  + K W+YD L
Sbjct: 265 GFFALYMGITQKKWSYDLL 283


>UniRef50_UPI00006CB0AF Cluster: hypothetical protein
           TTHERM_00242290; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00242290 - Tetrahymena
           thermophila SB210
          Length = 191

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +1

Query: 352 NNASDKFVFLKFYIHMTVILNDDETFISKQLNSFQHSHEILFKNTP 489
           NN+S +        H+ + LN DE  +SK + SF + + + FK+ P
Sbjct: 78  NNSSQEIELSNNTPHLPIYLNQDENEVSKTIQSFSNQNILRFKDFP 123


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,855,031
Number of Sequences: 1657284
Number of extensions: 10120353
Number of successful extensions: 20148
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20128
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)