Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0521.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.1  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   7.1  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.1  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.4  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.4  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.4  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 240 IPTPESKFSTPDWMQSRRVDP 178
           +P P+    T  WMQ +R  P
Sbjct: 187 VPQPQPVLPTYKWMQVKRNVP 207


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 240 IPTPESKFSTPDWMQSRRVDP 178
           +P P+    T  WMQ +R  P
Sbjct: 187 VPQPQPVLPTYKWMQVKRNVP 207


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 240 IPTPESKFSTPDWMQSRRVDP 178
           +P P+    T  WMQ +R  P
Sbjct: 187 VPQPQPVLPTYKWMQVKRNVP 207


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 363 QAGNLEPGGEFLGSNRVR 416
           Q   + PGG+F G++ ++
Sbjct: 39  QNSYIPPGGDFFGNHHIQ 56


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 363 QAGNLEPGGEFLGSNRVR 416
           Q   + PGG+F G++ ++
Sbjct: 39  QNSYIPPGGDFFGNHHIQ 56


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 363 QAGNLEPGGEFLGSNRVR 416
           Q   + PGG+F G++ ++
Sbjct: 39  QNSYIPPGGDFFGNHHIQ 56


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 363 QAGNLEPGGEFLGSNRVR 416
           Q   + PGG+F G++ ++
Sbjct: 39  QNSYIPPGGDFFGNHHIQ 56


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,214
Number of Sequences: 336
Number of extensions: 2655
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)