Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0521.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    29   0.45 
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb...    28   0.79 
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   1.4  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.2  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   4.2  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   4.2  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   5.6  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   5.6  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.7  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.7  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    25   9.7  

>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -1

Query: 491 FVFNLFVLGLVKQGIKGVPLERPPEANAVGAQEFAAGFKVPSLSTSPKFLGGCLSVFL 318
           +V  +FVLGL       +      + NA  A  F    K+  +   P  +  CL VF+
Sbjct: 289 YVIGVFVLGLCVPYDSDILSSNASKGNAA-ASPFVVAIKLAQIKVMPDVINACLLVFI 345


>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 468 GTR*ARD*RGPLGATARSERGWSPGIRRRVQGSQLVNVSQVL 343
           GT+ A   R PLG+T +S    S  + R V G +  N+S+ +
Sbjct: 25  GTKGAGSKRAPLGSTKQSNAPSSVTVPRTVLGGKSTNISKFI 66


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 169 LFVLQAVEYFPGKVLLQQRLRVGSLELAETSLQFLEG--CGVDHC 41
           LFV+  VEY PG  L    LR GS    +T+ +FL    CG+++C
Sbjct: 83  LFVV--VEYMPGGELFDCMLRKGSFTEQDTA-KFLWQILCGLEYC 124


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 159 RTKRPHSDPPSLTASNRVSRTWTPA 233
           R  RP  +PP L+ASN    T  P+
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPS 415


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -3

Query: 174 EVFLFFRLSNTSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFLAL 22
           E + F RL  T    +F S + E      L  AS  S+VAA  I AAF+ L
Sbjct: 518 EKYDFNRLLAT-FAMHFSSEEDEIQQTKKLNRASVISKVAALIITAAFIIL 567


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 408 GWSPGIRRRVQGSQLVNVSQVLGRVLVGLLEAIVVVLDDRVKQ 280
           GWSP +   +    +   S+VLGRV   + +    V+D+ +K+
Sbjct: 857 GWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKE 899


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 144 TSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFL 28
           +SLV++     ++     +LKP + F  V A   VA FL
Sbjct: 384 SSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFL 422


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 129 TLPGKYSTA*RTKRPHSDPPSLTASNRVSRTWTP 230
           TLP   +T  +T R  + PPS   SNR +  + P
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRP 488


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 240  IPTPESKFSTPDWMQSR 190
            I  P ++F  PDW+Q R
Sbjct: 1152 ISNPVTRFPLPDWLQKR 1168


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 391 NSWAPTAFASGGRSKGTP 444
           N   PT F SGG SK TP
Sbjct: 238 NKPKPTPFGSGGPSKPTP 255


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 335  CLSVFLKPLW*SSMIGSNXS 276
            C+SVFL+  W SS+ G + S
Sbjct: 2202 CISVFLQNFWLSSLNGRSWS 2221


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 141 SLVRYFFSSDLESDPWSLLK-PASNFSRVAASTIVAAFLALEQP 13
           S++R F   D++  P      P+S  S +A ST+ A  L  +QP
Sbjct: 188 SIIRSF--PDIQKQPKGFFSYPSSTVSSIAPSTLEAGNLHSQQP 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,232,343
Number of Sequences: 5004
Number of extensions: 43900
Number of successful extensions: 169
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)