Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0521.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0384 - 2781362-2782299,2782320-2782428 30 1.4
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 29 1.8
05_05_0173 + 22956927-22958615 29 1.8
03_05_0447 - 24421442-24422767 29 1.8
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 2.4
09_04_0163 - 15249816-15249920,15250032-15250163,15250463-152506... 28 5.6
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 28 5.6
05_03_0470 + 14448243-14448482,14448568-14449181,14449508-144501... 28 5.6
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 28 5.6
08_01_0438 + 3852221-3853207,3853544-3854757,3855258-3855330,385... 27 7.5
03_05_0908 + 28686855-28687328 27 7.5
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 27 9.9
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 9.9
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 29.9 bits (64), Expect = 1.4
Identities = 23/69 (33%), Positives = 29/69 (42%)
Frame = -2
Query: 544 GVRTSLEFPLEVNRFPKTLSSISLYWDSLSKGLKGSPWSDRPKRTRLEPRNSPPGSRFPA 365
G +++ P RFP + + +LS SP S P RTRL P SPP
Sbjct: 178 GGSSAIPPPATAPRFPPPRAMTARTALALSPTTSASPAS--PSRTRLAPPRSPPAGGASG 235
Query: 364 CQRLPSSWA 338
R SS A
Sbjct: 236 APRRSSSAA 244
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 23 SARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDC 199
S K + + + +++ + G F K D S + K+ TRE+ D+ K + +LDC
Sbjct: 94 SVWKGGMIKEYSKMDECKTGDFGKRPLIDDISTVCKWFTRELSDTTYGKNAQLAAKVLDC 153
Query: 200 I 202
+
Sbjct: 154 V 154
>05_05_0173 + 22956927-22958615
Length = 562
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 334 HPPKNLGDVDKLGTLNPAANSWAPTAFASGGRSKGTPLIPCLTSPNTKRLKTKSSGTC*P 513
HPP L + LG ++ ++S A ++F + P + CL S ++ L+ + + P
Sbjct: 121 HPPLLLRPSELLGWVDRPSSSTASSSFRPERVDRYRPPVICLNSRQSRCLRPRRFRSDLP 180
Query: 514 PRGTQ 528
P G++
Sbjct: 181 PLGSE 185
>03_05_0447 - 24421442-24422767
Length = 441
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 11 DGCSSARKAATMVDAATLEKLEAGFSKLQG-SDSK 112
DGC S+ ++ AA L +LEAG K G SD++
Sbjct: 63 DGCGSSGAGDALLAAAALARLEAGLRKRTGDSDAR 97
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -3
Query: 183 DPNEVFLFFRLSNTSLVRYFFSSDLE-SDPWSLLKPASNFSRVAASTIVAAFLA 25
D +++ L + LV YF+ SD SLL SNF+R+A+ + ++ F++
Sbjct: 139 DASKLALKHTRAGAPLVAYFWDKTFAWSDASSLLPFCSNFTRLASQSTMSGFVS 192
>09_04_0163 -
15249816-15249920,15250032-15250163,15250463-15250629,
15251259-15251448,15252530-15252661,15253275-15253382,
15253513-15253608,15253702-15253809,15253917-15254089,
15255026-15255401,15255887-15256030,15256125-15256799,
15256917-15256982,15257082-15257249
Length = 879
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 23 SARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDC 199
S K + + + +++ + G F K D S + K+ TRE D+ K + +LDC
Sbjct: 326 SVWKGGMIKEYSKIDECKTGDFGKRPLIDDISTVCKWFTREHSDTTYGKNAQLAAKVLDC 385
Query: 200 I 202
+
Sbjct: 386 V 386
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 71 LEAGFSKLQGSDSKSLLKKYLTREVFDSLKNKKTSFGSTL-LDCIQSGVENLDSGVGIYA 247
L AG +KL SDS+S +K+ +FD LK+ F + + ++S + L S +
Sbjct: 1269 LLAGLAKLT-SDSRSTIKRSAVGVLFDILKDHGQLFSESFWTNILESVIYPLFSSERSSS 1327
Query: 248 PDAXRTPCSP 277
D TP P
Sbjct: 1328 NDPTSTPSIP 1337
>05_03_0470 +
14448243-14448482,14448568-14449181,14449508-14450135,
14450217-14450827,14450911-14451162,14451243-14451353,
14451441-14451501,14451603-14451695,14451773-14451940
Length = 925
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = -2
Query: 472 YWDSLSKGLKGSPWSDRPKRTRLEPRNSPPGSRFPACQRLPSSWAG 335
YWD +S G K W + K + P S R A Q + SW G
Sbjct: 174 YWDYVSNGDKEVLWKELKKIFQF-PDGSKAAVRNCALQTMAKSWRG 218
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 27.9 bits (59), Expect = 5.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 237 PTPESKFSTPDWMQS 193
P PE+K TPDW+QS
Sbjct: 117 PPPEAKKVTPDWLQS 131
>08_01_0438 +
3852221-3853207,3853544-3854757,3855258-3855330,
3856715-3856843,3857060-3857103,3857186-3857265,
3857342-3857396,3857712-3857919
Length = 929
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -2
Query: 448 LKGSPWSDRPKRTRLEPRNSPPGSRFPACQRLPSSW 341
L GS W KR EP S PG P Q P+SW
Sbjct: 870 LSGSEWGSIAKRLP-EPELSAPGGSRPR-QTCPNSW 903
>03_05_0908 + 28686855-28687328
Length = 157
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 40 NNGRRRNPREIGGWFQQAPG 99
++G R +PRE+ GWF A G
Sbjct: 26 SHGARPSPRELQGWFAAAAG 45
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 499 PKTLSSISLYWDSLSKGLKGSPWSDRPKR 413
PK S L+W +++ ++GS W D K+
Sbjct: 832 PKKASLKPLHWVKVTRAMQGSLWEDAQKQ 860
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Frame = +1
Query: 361 DKLGTLNPAANSWAPTAFASGG--RSKGTPLIPCLTSPNTKRLKTKSS 498
+K+ T++P S A + GG +SKG+ + + P+ KR++T+++
Sbjct: 56 EKVVTVSPEKVSGAKSTDEGGGSDKSKGSEVGKSVLQPDVKRIRTEAA 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,726,142
Number of Sequences: 37544
Number of extensions: 332124
Number of successful extensions: 1346
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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