Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0521.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    30   1.2  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    30   1.2  
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    29   2.7  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    29   2.7  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    29   2.7  
At3g52250.1 68416.m05742 myb family transcription factor contain...    27   6.2  
At5g20560.1 68418.m02441 beta-1,3-glucanase, putative similar to...    27   8.3  
At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containi...    27   8.3  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    27   8.3  
At1g36390.2 68414.m04521 co-chaperone grpE family protein simila...    27   8.3  
At1g36390.1 68414.m04520 co-chaperone grpE family protein simila...    27   8.3  

>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 30  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTA 200
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTS 85


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +3

Query: 30  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPGKYSTA*RTKRPHSDPPSLTA 200
           E   ++ +P P++N R  S S   PT+S   +S +  K + +   KRP S PPS T+
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQS-VAAKRAVSAERKRP-STPPSPTS 85


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 11  DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 124
           DGC SA   A   D   +E  E G + KL+ S+  SLL+
Sbjct: 96  DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 11  DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 124
           DGC SA   A   D   +E  E G + KL+ S+  SLL+
Sbjct: 96  DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 499 PKTLSSISLYWDSLSKGLKGSPWSDRPKRTRLEPR 395
           PK  +   L+W  +++  KGS W+D  K+   +PR
Sbjct: 792 PKKTALKPLHWSKVTRAAKGSLWADTQKQEN-QPR 825


>At3g52250.1 68416.m05742 myb family transcription factor contains
            Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 1677

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 430  SDRPKRTRLEPRNSPPGSRFPAC 362
            ++R + + LEP ++P G R+P C
Sbjct: 1361 ANRTRNSGLEPESAPSGFRYPEC 1383


>At5g20560.1 68418.m02441 beta-1,3-glucanase, putative similar to
           plant beta-1,3-glucanase genes bg4 GI:2808438 from
           [Arabidopsis thaliana]
          Length = 337

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 494 DFVFNLFVLGLVKQGIKGVPL 432
           D +F+ F+  + K+G+KG+PL
Sbjct: 244 DAIFDAFLWAMEKEGVKGLPL 264


>At4g31070.1 68417.m04411 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 613

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 KKYLTREVFDSLKNKKT-SFGSTLLDCIQSGV 214
           +KY  R+VFD + ++ T S+ S +  C Q G+
Sbjct: 97  RKYAVRKVFDEMLHRDTVSYCSIINSCCQDGL 128


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 95  QGSDSKSLLKKYLTREVFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGI 241
           +GSD  SL    ++    D+   K T+FGS+ LD ++  +   DSG+ +
Sbjct: 263 KGSDLTSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLH--DSGMPV 309


>At1g36390.2 68414.m04521 co-chaperone grpE family protein similar
           to co-chaperone CGE1 precursor isoform b [Chlamydomonas
           reinhardtii] GI:15384279; contains Pfam profile PF01025:
           co-chaperone GrpE
          Length = 279

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 435 GDPFNPLLNESQYKEIEDKVFGNLLTSKGNSRDVL 539
           G PF+PLL+E+  +E  + V   ++T + N   VL
Sbjct: 213 GKPFDPLLHEAISREESEAVKAGIITEELNKGFVL 247


>At1g36390.1 68414.m04520 co-chaperone grpE family protein similar
           to co-chaperone CGE1 precursor isoform b [Chlamydomonas
           reinhardtii] GI:15384279; contains Pfam profile PF01025:
           co-chaperone GrpE
          Length = 279

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 435 GDPFNPLLNESQYKEIEDKVFGNLLTSKGNSRDVL 539
           G PF+PLL+E+  +E  + V   ++T + N   VL
Sbjct: 213 GKPFDPLLHEAISREESEAVKAGIITEELNKGFVL 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,195,942
Number of Sequences: 28952
Number of extensions: 247823
Number of successful extensions: 928
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)