Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0520.Seq
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 112 3e-26
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 111 1e-25
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 69 5e-13
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 52 7e-08
SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces pombe... 26 4.9
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch... 25 8.6
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 112 bits (270), Expect = 3e-26
Identities = 49/87 (56%), Positives = 66/87 (75%)
Frame = +1
Query: 253 SNTADSCFNTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAAD 432
S +D F+TFFSE +GK VP + VDLE VID+VR+G YR L+HP QLITGKEDA++
Sbjct: 42 SQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASN 101
Query: 433 NYARGHYSTGREVLSPAIERIRKLAVN 513
NYARGHY+ G+E++ ++IR++A N
Sbjct: 102 NYARGHYTVGKELVDEVTDKIRRIADN 128
Score = 66.5 bits (155), Expect = 3e-12
Identities = 26/34 (76%), Positives = 31/34 (91%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDG 229
MRE IS+HVGQAG Q+G ACW+LYCLEHGI+P+G
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNG 34
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 513 CTGLQGCFVFHXXXXXXXXXXXXLLMEK 596
C+GLQG VFH LL+E+
Sbjct: 129 CSGLQGFLVFHSFGGGTGSGFGALLLER 156
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 111 bits (266), Expect = 1e-25
Identities = 46/80 (57%), Positives = 63/80 (78%)
Frame = +1
Query: 274 FNTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHY 453
F TFFSE +GK VP + VDLE VID+VR+G Y+ L+HP Q++TGKEDA++NYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 454 STGREVLSPAIERIRKLAVN 513
+ G+E++ +ERIR++A N
Sbjct: 113 TVGKEMIDSVLERIRRMADN 132
Score = 69.3 bits (162), Expect = 4e-13
Identities = 29/34 (85%), Positives = 31/34 (91%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDG 229
MRE ISVHVGQAGVQ+G ACW+LYCLEHGI PDG
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG 34
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 513 CTGLQGCFVFHXXXXXXXXXXXXLLMEK 596
C+GLQG VFH LL+E+
Sbjct: 133 CSGLQGFLVFHSFGGGTGSGLGALLLER 160
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 68.9 bits (161), Expect = 5e-13
Identities = 30/77 (38%), Positives = 49/77 (63%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHYS 456
N +F+EA GK VP V+VDLE +D V+SG++ L+ P +I G+ A + +A+GHY+
Sbjct: 48 NVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYT 107
Query: 457 TGREVLSPAIERIRKLA 507
G E+ ++ +R+ A
Sbjct: 108 EGAELADAVLDVVRREA 124
Score = 33.9 bits (74), Expect = 0.019
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDG 229
MRE + + GQ G Q+G A W EHG+ G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAG 34
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 52.0 bits (119), Expect = 7e-08
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +2
Query: 131 RECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDLIQR 265
RE I++ GQ G Q+G WQ CLEHGI PDGTL + T+ + R
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDR 47
Score = 45.2 bits (102), Expect = 8e-06
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKE--DAADNYARGH 450
+ FF ++D + +P +++DLE V++ + S Y LY+P ++ K A +N+A G
Sbjct: 49 DVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG- 107
Query: 451 YSTGREVLSPAIERIRKLA 507
YS + ++ I + A
Sbjct: 108 YSHAERIFEDIMDMIDREA 126
>SPBC16E9.03c |||DUF1783 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 249
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = -2
Query: 251 QFHKRAGFRQVGSRAPSSIAASTRRPSGPRLGP 153
+ HKR GF + S+A+ T R GP
Sbjct: 186 KLHKRQGFIDINFEVSGSLASGTVHYQSQRFGP 218
>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
Nak1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 362 TSSITVASKSTMTTVGTIFPRSAS 291
++S T A+ S+ T GT+ P+S++
Sbjct: 340 STSTTTAATSSTTVTGTVIPKSST 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,329
Number of Sequences: 5004
Number of extensions: 41388
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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