Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0520.Seq
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    22   5.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   9.4  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.4  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +1

Query: 511 NVPDYRVASCFIRLEVAHDLDSH 579
           NV  YR A+C    +  H L  H
Sbjct: 41  NVYQYRCANCTYATKYCHSLKLH 63


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 121 FKYEGVHIRTRGPSR 165
           FKY+G+ I  + PSR
Sbjct: 539 FKYQGITILEKKPSR 553


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 221 PDGTLPACETDLIQR 265
           P+G + AC TD   R
Sbjct: 195 PEGNMTACGTDYFNR 209


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 221 PDGTLPACETDLIQR 265
           P+G + AC TD   R
Sbjct: 71  PEGNMTACGTDYFNR 85


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/45 (24%), Positives = 18/45 (40%)
 Frame = -2

Query: 308 FPRSASEKNVLKQESAVLDQFHKRAGFRQVGSRAPSSIAASTRRP 174
           FPR  S    +      + Q  +RA  R+   R P     + ++P
Sbjct: 150 FPRGGSLPTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKP 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,352
Number of Sequences: 438
Number of extensions: 2929
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)