Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0520.Seq
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 121 3e-28
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 121 3e-28
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 121 3e-28
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 121 3e-28
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 120 7e-28
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 120 7e-28
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 119 1e-27
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 77 1e-14
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 76 2e-14
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 76 2e-14
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 76 2e-14
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 75 5e-14
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 75 5e-14
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 75 5e-14
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 74 6e-14
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 74 6e-14
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 46 3e-05
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 45 4e-05
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 38 0.007
At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transfera... 29 1.8
At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transfera... 29 1.8
At5g35180.1 68418.m04169 expressed protein 29 2.4
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 5.5
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 5.5
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 5.5
At3g56030.1 68416.m06225 pentatricopeptide (PPR) repeat-containi... 27 7.3
At5g67130.1 68418.m08463 expressed protein 27 9.6
At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger) fa... 27 9.6
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 121 bits (292), Expect = 3e-28
Identities = 55/83 (66%), Positives = 66/83 (79%)
Frame = +1
Query: 265 DSCFNTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYAR 444
D FNTFFSE GK VP V VDLE TVIDEVR+G YRQL+HP QLI+GKEDAA+N+AR
Sbjct: 46 DDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFAR 105
Query: 445 GHYSTGREVLSPAIERIRKLAVN 513
GHY+ G+E++ ++RIRKLA N
Sbjct: 106 GHYTIGKEIVDLCLDRIRKLADN 128
Score = 77.8 bits (183), Expect = 5e-15
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACET 250
MRECIS+H+GQAG+Q+G ACW+LYCLEHGI+PDG +P +T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKT 41
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 121 bits (292), Expect = 3e-28
Identities = 55/83 (66%), Positives = 66/83 (79%)
Frame = +1
Query: 265 DSCFNTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYAR 444
D FNTFFSE GK VP V VDLE TVIDEVR+G YRQL+HP QLI+GKEDAA+N+AR
Sbjct: 46 DDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFAR 105
Query: 445 GHYSTGREVLSPAIERIRKLAVN 513
GHY+ G+E++ ++RIRKLA N
Sbjct: 106 GHYTIGKEIVDLCLDRIRKLADN 128
Score = 77.8 bits (183), Expect = 5e-15
Identities = 29/41 (70%), Positives = 37/41 (90%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACET 250
MRECIS+H+GQAG+Q+G ACW+LYCLEHGI+PDG +P +T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKT 41
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 121 bits (292), Expect = 3e-28
Identities = 55/83 (66%), Positives = 66/83 (79%)
Frame = +1
Query: 265 DSCFNTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYAR 444
D FNTFFSE GK VP V VDLE TVIDEVR+G YRQL+HP QLI+GKEDAA+N+AR
Sbjct: 46 DDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFAR 105
Query: 445 GHYSTGREVLSPAIERIRKLAVN 513
GHY+ G+E++ ++RIRKLA N
Sbjct: 106 GHYTIGKEIVDLCLDRIRKLADN 128
Score = 78.2 bits (184), Expect = 4e-15
Identities = 29/41 (70%), Positives = 38/41 (92%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACET 250
MRECIS+H+GQAG+Q+G ACW+LYCLEHGI+PDG +P+ +T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKT 41
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 121 bits (292), Expect = 3e-28
Identities = 55/83 (66%), Positives = 66/83 (79%)
Frame = +1
Query: 265 DSCFNTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYAR 444
D FNTFFSE GK VP V VDLE TVIDEVR+G YRQL+HP QLI+GKEDAA+N+AR
Sbjct: 46 DDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFAR 105
Query: 445 GHYSTGREVLSPAIERIRKLAVN 513
GHY+ G+E++ ++RIRKLA N
Sbjct: 106 GHYTIGKEIVDLCLDRIRKLADN 128
Score = 78.2 bits (184), Expect = 4e-15
Identities = 29/41 (70%), Positives = 38/41 (92%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACET 250
MRECIS+H+GQAG+Q+G ACW+LYCLEHGI+PDG +P+ +T
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKT 41
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 120 bits (289), Expect = 7e-28
Identities = 54/84 (64%), Positives = 66/84 (78%)
Frame = +1
Query: 262 ADSCFNTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYA 441
A FNTFFSE GK VP V VDLE TVIDEVR+G YRQL+HP QLI+GKEDAA+N+A
Sbjct: 45 AHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFA 104
Query: 442 RGHYSTGREVLSPAIERIRKLAVN 513
RGHY+ G+E++ ++R+RKLA N
Sbjct: 105 RGHYTVGKEIVDLCLDRVRKLADN 128
Score = 72.1 bits (169), Expect = 3e-13
Identities = 27/41 (65%), Positives = 36/41 (87%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACET 250
MRE IS+H+GQAG+Q+G +CW+LYCLEHGI+PDG +P+ T
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTT 41
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 120 bits (289), Expect = 7e-28
Identities = 54/84 (64%), Positives = 66/84 (78%)
Frame = +1
Query: 262 ADSCFNTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYA 441
A FNTFFSE GK VP V VDLE TVIDEVR+G YRQL+HP QLI+GKEDAA+N+A
Sbjct: 45 AHDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFA 104
Query: 442 RGHYSTGREVLSPAIERIRKLAVN 513
RGHY+ G+E++ ++R+RKLA N
Sbjct: 105 RGHYTVGKEIVDLCLDRVRKLADN 128
Score = 72.1 bits (169), Expect = 3e-13
Identities = 27/41 (65%), Positives = 36/41 (87%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACET 250
MRE IS+H+GQAG+Q+G +CW+LYCLEHGI+PDG +P+ T
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTT 41
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 119 bits (287), Expect = 1e-27
Identities = 53/80 (66%), Positives = 65/80 (81%)
Frame = +1
Query: 274 FNTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHY 453
FNTFFSE G+ VP V +DLE TVIDEVR+G YRQL+HP QLI+GKEDAA+N+ARGHY
Sbjct: 49 FNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHY 108
Query: 454 STGREVLSPAIERIRKLAVN 513
+ GRE++ +ER+RKLA N
Sbjct: 109 TVGREIVDTCLERLRKLADN 128
Score = 74.9 bits (176), Expect = 4e-14
Identities = 28/41 (68%), Positives = 37/41 (90%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACET 250
MRE IS+H+GQAG+Q+G +CW+LYCLEHGI+PDGT+P+ T
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDST 41
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/98 (35%), Positives = 56/98 (57%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHYS 456
N +++EA G+ VP V++DLE +D VRSG Y Q++ P + G+ A +N+A+GHY+
Sbjct: 48 NVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 457 TGREVLSPAIERIRKLAVNVPDYRVASCFIRLEVAHDL 570
G E++ ++ +RK A N C +V H L
Sbjct: 108 EGAELIDSVLDVVRKEAEN------CDCLQGFQVCHSL 139
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDL-IQRI 268
MRE + + GQ G Q+G W++ C EHGI G E DL ++R+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQG-ENDLQLERV 47
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/98 (35%), Positives = 56/98 (57%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHYS 456
N +F+EA GK VP V++DLE +D +RSG + Q++ P + G+ A +N+A+GHY+
Sbjct: 48 NVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 457 TGREVLSPAIERIRKLAVNVPDYRVASCFIRLEVAHDL 570
G E++ ++ +RK A N C +V H L
Sbjct: 108 EGAELIDSVLDVVRKEAEN------CDCLQGFQVCHSL 139
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPAC-ETDL-IQRI 268
MRE + + GQ G Q+G W++ C EHGI D T +C +TDL ++RI
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGI--DQTGQSCGDTDLQLERI 47
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 76.2 bits (179), Expect = 2e-14
Identities = 35/98 (35%), Positives = 56/98 (57%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHYS 456
N +++EA G+ VP V++DLE +D VRSG Y Q++ P + G+ A +N+A+GHY+
Sbjct: 48 NVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 457 TGREVLSPAIERIRKLAVNVPDYRVASCFIRLEVAHDL 570
G E++ ++ +RK A N C +V H L
Sbjct: 108 EGAELIDSVLDVVRKEAEN------CDCLQGFQVCHSL 139
Score = 34.3 bits (75), Expect = 0.064
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDG 229
MRE + + GQ G Q+G W++ LEHGI G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTG 34
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/98 (34%), Positives = 56/98 (57%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHYS 456
N +++EA G+ VP V++DLE +D +RSG Y Q++ P + G+ A +N+A+GHY+
Sbjct: 49 NVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 108
Query: 457 TGREVLSPAIERIRKLAVNVPDYRVASCFIRLEVAHDL 570
G E++ ++ +RK A N C +V H L
Sbjct: 109 EGAELIDAVLDVVRKEAEN------CDCLQGFQVCHSL 140
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDL-IQRI 268
MRE + V GQ G Q+G W++ C EHG+ P G DL ++RI
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSADLQLERI 48
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 74.5 bits (175), Expect = 5e-14
Identities = 34/98 (34%), Positives = 57/98 (58%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHYS 456
+ +F+EA GK VP V++DLE +D +RSG + Q++ P + G+ A +N+A+GHY+
Sbjct: 48 DVYFNEASGGKYVPRAVLMDLEPGTMDSLRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 457 TGREVLSPAIERIRKLAVNVPDYRVASCFIRLEVAHDL 570
G E++ ++ +RK A N + C +V H L
Sbjct: 108 EGAELIDSVLDVVRKEAEN------SDCLQGFQVCHSL 139
Score = 36.3 bits (80), Expect = 0.016
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDG 229
MRE + + GQ G Q+G W++ C EHGI G
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTG 34
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 74.5 bits (175), Expect = 5e-14
Identities = 33/98 (33%), Positives = 56/98 (57%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHYS 456
N +++EA G+ VP +++DLE +D VR+G Y Q++ P + G+ A +N+A+GHY+
Sbjct: 48 NVYYNEASCGRYVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 457 TGREVLSPAIERIRKLAVNVPDYRVASCFIRLEVAHDL 570
G E++ ++ +RK A N C +V H L
Sbjct: 108 EGAELIDAVLDVVRKEAEN------CDCLQGFQVCHSL 139
Score = 39.1 bits (87), Expect = 0.002
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDG 229
MRE + + GQ G Q+G W++ C EHGI P G
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTG 34
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 74.5 bits (175), Expect = 5e-14
Identities = 33/98 (33%), Positives = 56/98 (57%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHYS 456
N +++EA G+ VP V++DLE +D +RSG + Q++ P + G+ A +N+A+GHY+
Sbjct: 49 NVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYT 108
Query: 457 TGREVLSPAIERIRKLAVNVPDYRVASCFIRLEVAHDL 570
G E++ ++ +RK A N C +V H L
Sbjct: 109 EGAELIDAVLDVVRKEAEN------CDCLQGFQVCHSL 140
Score = 37.9 bits (84), Expect = 0.005
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDL-IQRI 268
MRE + + GQ G Q+G W++ C EHGI G DL ++RI
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGDTADLQLERI 48
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 74.1 bits (174), Expect = 6e-14
Identities = 34/98 (34%), Positives = 55/98 (56%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHYS 456
N +++EA G+ VP V++DLE +D +RSG Y Q + P + G+ A +N+A+GHY+
Sbjct: 48 NVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 457 TGREVLSPAIERIRKLAVNVPDYRVASCFIRLEVAHDL 570
G E++ ++ +RK A N C +V H L
Sbjct: 108 EGAELIDSVLDVVRKEAEN------CDCLQGFQVCHSL 139
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDL-IQRI 268
MRE + + GQ G Q+G W++ C EHGI P G ++DL ++RI
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTG-DSDLQLERI 47
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 74.1 bits (174), Expect = 6e-14
Identities = 34/98 (34%), Positives = 55/98 (56%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHYS 456
N +++EA G+ VP V++DLE +D +RSG Y Q + P + G+ A +N+A+GHY+
Sbjct: 48 NVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGHYT 107
Query: 457 TGREVLSPAIERIRKLAVNVPDYRVASCFIRLEVAHDL 570
G E++ ++ +RK A N C +V H L
Sbjct: 108 EGAELIDSVLDVVRKEAEN------CDCLQGFQVCHSL 139
Score = 41.5 bits (93), Expect = 4e-04
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 128 MRECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTLPACETDL-IQRI 268
MRE + + GQ G Q+G W++ C EHGI P G ++DL ++RI
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTG-DSDLQLERI 47
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKE--DAADNYARGH 450
+ FF +AD +P +++DLE VI+ +++GEYR LY+ + A +N+A G
Sbjct: 49 DVFFYQADDQHYIPRALLIDLEPRVINGIQNGEYRNLYNHENIFLSDHGGGAGNNWASG- 107
Query: 451 YSTGREVLSPAIERIRKLA 507
Y G+ V ++ I + A
Sbjct: 108 YHQGKGVEEEIMDMIDREA 126
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +2
Query: 131 RECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTL 235
RE I++ VGQ G Q+G+ W+ CLEHGI DG L
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGIL 37
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/35 (54%), Positives = 24/35 (68%)
Frame = +2
Query: 131 RECISVHVGQAGVQMGVACWQLYCLEHGIRPDGTL 235
RE I++ VGQ G Q+G+ W+ CLEHGI DG L
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGIL 37
Score = 44.8 bits (101), Expect = 4e-05
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Frame = +1
Query: 277 NTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKE--DAADNYARGH 450
+ FF +AD +P +++DLE VI+ +++G+YR LY+ + A +N+A G
Sbjct: 49 DVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASG- 107
Query: 451 YSTGREVLSPAIERIRKLA 507
Y G+ V ++ I + A
Sbjct: 108 YHQGKGVEEEIMDMIDREA 126
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 37.5 bits (83), Expect = 0.007
Identities = 28/81 (34%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +1
Query: 253 SNTADSCFNTFFSEADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITG-KEDAA 429
S T D N+ S D +V TVV+V +E + + S ++ A + G KED A
Sbjct: 1234 SRTIDEPRNSLESYCDAAVVVATVVVVVVEQEIPNLRYSSNSIEVVEKAAINMGSKEDKA 1293
Query: 430 DNYARGHYSTGREVLSPAIER 492
DN A Y E LS I R
Sbjct: 1294 DNPALSSYDDAMEALSTLISR 1314
>At1g22370.2 68414.m09509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 479
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 253 SNTADSCFNTFFSEADRGKMVPTVVMVDLEATVIDEVRS 369
+NT D N F EADR K +++ ++ D VRS
Sbjct: 202 TNTEDIMLNFFVHEADRAKRASAIILNTFDSLEHDVVRS 240
>At1g22370.1 68414.m09508 UDP-glucoronosyl/UDP-glucosyl transferase
family protein glycosyltransferase family
Length = 309
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 253 SNTADSCFNTFFSEADRGKMVPTVVMVDLEATVIDEVRS 369
+NT D N F EADR K +++ ++ D VRS
Sbjct: 32 TNTEDIMLNFFVHEADRAKRASAIILNTFDSLEHDVVRS 70
>At5g35180.1 68418.m04169 expressed protein
Length = 778
Score = 29.1 bits (62), Expect = 2.4
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 292 EADRGKMVPTVVMVDLEATVIDEVRSGEYRQLYHPAQLITGKEDAADNYARGHY 453
+A RG +V V +V+ A + EV + + +TG + D+Y GHY
Sbjct: 267 KAGRGVLVKAVAVVEASADTVFEVLLNIDKHQRYEWDAVTGDSEKIDSY-EGHY 319
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 232 GSVRSDPVLQAV*LPARDAHLDPGLAHVYGYALPHI 125
GSV SD Q LP++ +H L+ YGY + ++
Sbjct: 384 GSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNV 419
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 232 GSVRSDPVLQAV*LPARDAHLDPGLAHVYGYALPHI 125
GSV SD Q LP++ +H L+ YGY + ++
Sbjct: 384 GSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNV 419
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 232 GSVRSDPVLQAV*LPARDAHLDPGLAHVYGYALPHI 125
GSV SD Q LP++ +H L+ YGY + ++
Sbjct: 384 GSVYSDSTWQQQQLPSQSSHELDNLSRAYGYDIDNV 419
>At3g56030.1 68416.m06225 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 336
Score = 27.5 bits (58), Expect = 7.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -1
Query: 204 KQYSCQHATPIWTPAWPTCTDMHSLIFKTGNFG 106
+ +S + P +P TC + +LIFK G+ G
Sbjct: 24 RSFSTVNPNPTASPGRRTCVEFDNLIFKAGSSG 56
>At5g67130.1 68418.m08463 expressed protein
Length = 426
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = -2
Query: 371 PERTSSITVASKSTMTTVGTIFPRSASEKNVLKQESAVLDQFHKRAGFRQVGSRAPSSIA 192
P R S + SKS+ + FP EK+ K+ SA L + + G+R P+ +A
Sbjct: 268 PNRKESQPLNSKSSSLFLMNYFPTYPVEKDACKEHSAPLAEMVGTC-LKSGGNRMPNFLA 326
Query: 191 AS 186
+
Sbjct: 327 VN 328
>At2g35000.1 68415.m04294 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 378
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -2
Query: 359 SSITVASKSTMTT----VGTIFPRSASEKNVLKQESAVLDQFHKR 237
S+IT SKST + G +FPRS S + L Q + LD+F R
Sbjct: 231 SNITPRSKSTGLSSWQITGILFPRSHSTGHSLIQPAGNLDRFTLR 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,373,564
Number of Sequences: 28952
Number of extensions: 221963
Number of successful extensions: 700
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -