Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0519.Seq
         (475 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.2  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 285 RHQYCQSWILQVARQRQTPQTTCHSKS 365
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 258 ILSLVCSETNVQSLSKF 208
           +LSLVC++T +  L+ F
Sbjct: 63  LLSLVCADTRLNKLAVF 79


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 224  WTLVSEQTRLSMHLLQMARSPSSILS-KLDT 313
            WTLVS   ++    +     PSS+   K++T
Sbjct: 1544 WTLVSNSVKMQRRFVVTNLQPSSVYQLKVET 1574


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 224  WTLVSEQTRLSMHLLQMARSPSSILS-KLDT 313
            WTLVS   ++    +     PSS+   K++T
Sbjct: 1540 WTLVSNSVKMQRRFVVTNLQPSSVYQLKVET 1570


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,219
Number of Sequences: 438
Number of extensions: 2468
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)