Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0518.Seq
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian...    91   8e-19
U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian...    91   8e-19
AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical ...    50   1e-06
AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine re...    32   0.40 
AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine re...    31   0.70 
Z81482-5|CAB03956.3|  409|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical p...    28   6.6  
U72211-1|AAB97099.1|  409|Caenorhabditis elegans putative transc...    28   6.6  
L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.      28   6.6  
AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.    28   6.6  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    28   6.6  
AL132895-4|CAC14401.1|  333|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U41552-5|AAP82646.1|  183|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform b
           protein.
          Length = 183

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 44/98 (44%), Positives = 56/98 (57%)
 Frame = +1

Query: 268 DMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSV 447
           DMT  ELR+YDG +    +L  +NG I+DVTRG  FYGPG  Y    G DATR L T   
Sbjct: 49  DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQ 107

Query: 448 TAPEKDYDDLSDLNSMEMGIMREWEEQFRENYDLVXRL 561
            A   ++DD + +++ E     EWE QF+  Y  V RL
Sbjct: 108 NAVSSEWDDHTGISADEQETANEWETQFKFKYLTVGRL 145


>U41552-4|AAD31555.1|  198|Caenorhabditis elegans Vema (mammalian
           ventral midlineantigen) related protein 1, isoform a
           protein.
          Length = 198

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 44/98 (44%), Positives = 56/98 (57%)
 Frame = +1

Query: 268 DMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSV 447
           DMT  ELR+YDG +    +L  +NG I+DVTRG  FYGPG  Y    G DATR L T   
Sbjct: 64  DMTVEELRKYDGVKNE-HILFGLNGTIYDVTRGKGFYGPGKAYGTLAGHDATRALGTMDQ 122

Query: 448 TAPEKDYDDLSDLNSMEMGIMREWEEQFRENYDLVXRL 561
            A   ++DD + +++ E     EWE QF+  Y  V RL
Sbjct: 123 NAVSSEWDDHTGISADEQETANEWETQFKFKYLTVGRL 160


>AL024499-6|CAA19709.1|  326|Caenorhabditis elegans Hypothetical
           protein H38K22.3 protein.
          Length = 326

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/100 (28%), Positives = 49/100 (49%)
 Frame = +1

Query: 274 TAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPYAVFGGRDATRGLATFSVTA 453
           T  +L  +DGT++   + +A+ G +++V     +YGPG  Y  F GRDATR   T     
Sbjct: 102 TPEQLHFFDGTRDSKPIYLAILGRVYNVDGKKEYYGPGKSYHHFAGRDATRAFTTGDFQE 161

Query: 454 PEKDYDDLSDLNSMEMGIMREWEEQFRENYDLVXRLSEAW 573
                     L+  E+  +R+W   + + Y LV  +++ +
Sbjct: 162 SGL-IATTHGLSHDELLSIRDWVSFYDKEYPLVGVVADLY 200


>AF016451-8|AAB66004.2|  354|Caenorhabditis elegans Serpentine
           receptor, class t protein65 protein.
          Length = 354

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 95  NVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYYKYKTHCSKVAPLK 247
           +++ K +G F  L+ + C P +   F S  +I+Y  Y K K   S  + L+
Sbjct: 208 DMEVKFAGLFAELELVLCFPTLALSFCSYILIIYSIYKKRKLAQSSSSSLR 258


>AF016451-7|AAB66003.2|  312|Caenorhabditis elegans Serpentine
           receptor, class t protein64 protein.
          Length = 312

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +2

Query: 68  KMDSPPEVENVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYYK 211
           ++  P    +++ K++  F +L+ + C P +   F+S  +I+Y  Y K
Sbjct: 157 ELTGPNWAYDMKVKYADLFASLELVLCFPTLALSFISYILIIYSIYKK 204


>Z81482-5|CAB03956.3|  409|Caenorhabditis elegans Hypothetical
           protein C40H5.5 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 487 NSMEMGIMREWEEQFRENYDLVXRLS 564
           NS+      +W   F+E YDLV +L+
Sbjct: 46  NSVPSAFQFDWSSHFKEEYDLVEKLN 71


>Z79596-2|CAC42251.1|  838|Caenorhabditis elegans Hypothetical
           protein C02C6.1b protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 518 GRNNLERIMIWSVDFLRPG---EEPRNYSDEEPEE-ADTSALPTTTR 646
           G  NL+ I  W   FLR G   E+ +   DE  +E  DTS  P   R
Sbjct: 605 GCTNLDEIDAWKASFLRAGVYPEKQKAQEDESQQEMEDTSIDPQLER 651


>Z79596-1|CAB01857.1|  830|Caenorhabditis elegans Hypothetical
           protein C02C6.1a protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 518 GRNNLERIMIWSVDFLRPG---EEPRNYSDEEPEE-ADTSALPTTTR 646
           G  NL+ I  W   FLR G   E+ +   DE  +E  DTS  P   R
Sbjct: 605 GCTNLDEIDAWKASFLRAGVYPEKQKAQEDESQQEMEDTSIDPQLER 651


>Z75547-14|CAA99901.2|  461|Caenorhabditis elegans Hypothetical
           protein R11D1.7 protein.
          Length = 461

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 86  EVENVQAKHSGFFETLKTLFCQPFIYFVFVSTFVILYKFYY 208
           EV  V    +  F   K   C P + FVF  TF+++Y  ++
Sbjct: 14  EVFTVLGALAASFLVEKRFLCAPRMIFVFQQTFMLIYIIFF 54


>U72211-1|AAB97099.1|  409|Caenorhabditis elegans putative
           transcription factor TTX-3 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 487 NSMEMGIMREWEEQFRENYDLVXRLS 564
           NS+      +W   F+E YDLV +L+
Sbjct: 46  NSVPSAFQFDWSSHFKEEYDLVEKLN 71


>L29031-1|AAB72228.2|  830|Caenorhabditis elegans dynamin protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 518 GRNNLERIMIWSVDFLRPG---EEPRNYSDEEPEE-ADTSALPTTTR 646
           G  NL+ I  W   FLR G   E+ +   DE  +E  DTS  P   R
Sbjct: 605 GCTNLDEIDAWKASFLRAGVYPEKQKAQEDESQQEMEDTSIDPQLER 651


>AF167982-1|AAD50438.1|  838|Caenorhabditis elegans dynamin protein.
          Length = 838

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +2

Query: 518 GRNNLERIMIWSVDFLRPG---EEPRNYSDEEPEE-ADTSALPTTTR 646
           G  NL+ I  W   FLR G   E+ +   DE  +E  DTS  P   R
Sbjct: 605 GCTNLDEIDAWKASFLRAGVYPEKQKAQEDESQQEMEDTSIDPQLER 651


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = -2

Query: 431 SPLVASLPPKTAYGPPGP*NRF--PLVTSNIHPFT-AINTLPPSCV 303
           S +V +LP K +  P    + F  PLVTS+ +PFT  ++T P S V
Sbjct: 502 STVVHNLPTKPSSAPTLHPSTFSPPLVTSSENPFTFTLDTTPTSTV 547


>AL132895-4|CAC14401.1|  333|Caenorhabditis elegans Hypothetical
           protein Y59A8A.4 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -2

Query: 272 ISFRNLVVFSREQPLNNVSYTCSKIY----TVSQMYSQKQNK*TVDKTVFLRSQKSH 114
           + FR ++  S  Q  NNV Y CS ++    T+  +Y Q   +  V +     SQ SH
Sbjct: 261 VLFRTII--SNHQGFNNVVYICSSLHGVLSTLIMIYLQNPYRAVVKRIFCQSSQGSH 315


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
            protein Y39D8B.1 protein.
          Length = 1372

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +1

Query: 226  FKGCSLEKTTKLRKDMTAVELRQYDGTQEGGRVLMAVNGWIFDVTRGNRFYGPGGPY 396
            +K   ++   KL K M+A ++ + + T   G  +M+         + + FYGPG PY
Sbjct: 1266 YKTSKIDSMEKLHKSMSAAQMHEMNST---GYAIMSSQ-------QISEFYGPGSPY 1312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,936,221
Number of Sequences: 27780
Number of extensions: 355647
Number of successful extensions: 1187
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)