Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0516.Seq
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.5  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   7.2  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.6  

>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -3

Query: 507 ETHNWRVAY 481
           E HNWRV Y
Sbjct: 498 EYHNWRVVY 506


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 379 DIRDDDCEIEITAT 420
           ++ D DC++++T T
Sbjct: 47  ELSDSDCDLDVTGT 60


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 472 VCNVCNSPVVGF 507
           +C VC  P  GF
Sbjct: 4   LCKVCGEPAAGF 15


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 576 EHCMVRLPTPDMSRTLI 626
           +HC V +P P M   +I
Sbjct: 401 KHCGVNVPVPPMQSQII 417


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,581
Number of Sequences: 336
Number of extensions: 3646
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)