Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0516.Seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    43   5e-05
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    26   5.9  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    26   5.9  
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    26   5.9  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   7.9  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 480 CMQLSSCGFPYKCAICHDYDLCSKCEAAGNHNEHCMVRL 596
           C+     G  + C +C DYDLCS C +  +H+ H M+RL
Sbjct: 215 CLAHPIVGPRFHCLVCEDYDLCSSCVSHVHHDHHSMLRL 253



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 510 YKCAICHDYDLCSKCEAAGNH-NEHCMVRL 596
           YKC++C DYD+C  C    +H N H  VR+
Sbjct: 148 YKCSVCDDYDICESCLTDNSHSNTHAFVRI 177


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -1

Query: 647 GSLNCRLDQGARHVRCGETDHAVFIVIPGGLA-LGAQVVVMTNCA 516
           G++   L Q +    C E  + +  VIPGG+  +G   +++T+ A
Sbjct: 566 GTVTLGLSQISYDPSCAEQKYPLLFVIPGGIVIIGKCEILLTSSA 610


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = +2

Query: 59  CVILRPVHLYKSKMEDQVPFKVYAFFEENAQPEVRRFGVEKTVVSSFHYLNAKLQEVYPK 238
           CV ++ +  +      QVP +VYA+++E       R  +  +    +  + A  ++ YP 
Sbjct: 277 CVHVKKLFGFDPTKTFQVPPEVYAYYKE-------RVAIASSAEEEYKKMYASYKQSYPD 329

Query: 239 LRNKI 253
           L N++
Sbjct: 330 LSNQL 334


>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 480 CMQLSSCGFPYKCAICHDYDLCSKCEAAG 566
           C Q  +     +C  C D+DLC  C  +G
Sbjct: 11  CAQDITRSIHIRCVECVDFDLCIPCFTSG 39


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = +3

Query: 507 PYKCAICHDYDLCSKCEAAGNHNEHCMVRLPTPDMSR-TLIKAAIKR-SRHIFQNRVATH 680
           P +  I HDY++    +A       C++R+ +  +   T IK   K  S+H + N V   
Sbjct: 382 PIEVPIMHDYEINQIFDAISYSKGSCVIRMVSKYVGEDTFIKGIQKYISKHRYGNTVTE- 440

Query: 681 VDQW 692
            D W
Sbjct: 441 -DLW 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,926
Number of Sequences: 5004
Number of extensions: 56230
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)