Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0516.Seq
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469... 31 1.1
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 31 1.1
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762... 31 1.1
09_04_0532 + 18386593-18386722,18386826-18386900,18387098-183875... 30 1.5
05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608 29 3.5
03_06_0063 - 31391870-31392679 29 3.5
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 29 4.6
12_02_0314 - 17408216-17409078,17409107-17409284 28 6.1
06_03_0830 + 25159758-25162460 28 6.1
07_03_1772 + 29411874-29413218,29413355-29413421,29413749-294138... 28 8.1
03_05_1146 - 30735010-30735216,30735336-30735650,30740169-307401... 28 8.1
>04_04_1323 +
32644956-32645096,32645488-32646126,32646701-32646907,
32647020-32647100,32647686-32648566,32648641-32648932,
32649657-32650673,32651334-32651605,32651992-32652493
Length = 1343
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/43 (30%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +2
Query: 86 YKSKMEDQVPFKVYAFFE-ENAQPEVRRFGVEKTVVSSFHYLN 211
Y SKM+ +V F+VY+ + + A+ +FG ++ +++ +Y+N
Sbjct: 249 YSSKMKVEVHFQVYSMEKSDKAKTGNDKFGYKRNIINETYYIN 291
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 501 GFPYKCAICHDYDLCSKC-EAAGNHNEHCMVRLPT 602
G YK I DYDLC+ C GN NE+ + P+
Sbjct: 475 GSRYKSNIKDDYDLCNTCFSRMGNVNEYTRIDRPS 509
>02_02_0188 +
7617838-7620231,7621856-7622071,7622167-7622328,
7622466-7622516,7622936-7623070,7623161-7623184,
7623341-7623452,7623776-7623901,7624004-7624053,
7624339-7624497,7624582-7624677,7624751-7624866,
7624907-7624984,7624985-7625108,7625193-7625306,
7625423-7625503,7625616-7625756,7625834-7625848
Length = 1397
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 29 VVTPVLIRVICVILRPV-HLYKSKMEDQVPFK 121
V P+++ VIC+I+ + + K KM+D PFK
Sbjct: 482 VGAPIIVAVICIIILIIRRIMKRKMDDDDPFK 513
>09_04_0532 +
18386593-18386722,18386826-18386900,18387098-18387510,
18387682-18387688,18387944-18388005,18388046-18388341,
18388456-18388813,18388916-18389491,18389956-18390231
Length = 730
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 257 LKSCSAALGRLLAVSHSNNENC-SQQFSQHQISLLLAEHSPQKMHKL*MEL 108
L SCS AL RL A HS E S + + ++ + A+ P+ +H L + L
Sbjct: 347 LDSCSGALNRLRATLHSTEERLQSHKKETNYLAQVAAKSLPKGLHCLPLRL 397
>05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608
Length = 325
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Frame = +1
Query: 460 HSGVVCNVCNSPVV-----GFLTSAQFVMTTTCAPSARPPG 567
H GV C +C+S V+ F ++ ++ AP A PPG
Sbjct: 38 HQGVFCRLCSSCVLLYHPAAFCSACLLLLPPAAAPVAAPPG 78
>03_06_0063 - 31391870-31392679
Length = 269
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 501 GFPYKCAICHDYDLCSKCEAAGNHNEHCMVRLPTPDMSRTLIKAAI 638
G +KC++C S +A G H V+LPTP + L A +
Sbjct: 94 GAEFKCSVCGKS--FSSYQALGGHKTSHRVKLPTPPAAPVLAPAPV 137
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = -1
Query: 257 LKSCSAALGRLLAVSHSNNENCSQQFSQHQISLLLAEHSPQKMHKL*MELGPPFLIYINA 78
LK C GR+L +SN ++ + S+HQ + AE P++ +L IY NA
Sbjct: 96 LKDCKRLYGRIL--DNSNVQSSIRAESKHQSEKVWAEQYPKEPFELEYTSSSDNSIYANA 153
Query: 77 LAVK 66
A +
Sbjct: 154 GAAE 157
>12_02_0314 - 17408216-17409078,17409107-17409284
Length = 346
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +1
Query: 508 LTSAQFVMTTTCAPSARPPGITMNTAWSVSPHR 606
L A V TT P PP T NT S+ P R
Sbjct: 21 LLPAMDVFVTTADPDKEPPLATANTVLSIYPRR 53
>06_03_0830 + 25159758-25162460
Length = 900
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +1
Query: 358 NVHCKNPDIRDDDCEIEITATTMFPENTDGNTAVHSG 468
+V N +D+C+I + M P N+DGN + G
Sbjct: 198 SVPLPNHSQTNDNCDIVKQSLVMIPPNSDGNAIIGDG 234
>07_03_1772 + 29411874-29413218,29413355-29413421,29413749-29413896,
29415293-29415416,29416340-29416590,29416923-29418449,
29418786-29418896,29419576-29419734,29419827-29421734
Length = 1879
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 361 VHCKNPDIRDDDCEIEITATTMFPENTDGNTAVHSGVVCNVCNSP 495
VHC +P + D E+E + T T VHS +V NSP
Sbjct: 892 VHCDSP-VDDSKKEVESCCVEIPGNVTQKQTGVHSPMVDEKSNSP 935
>03_05_1146 -
30735010-30735216,30735336-30735650,30740169-30740191,
30740591-30740666,30740764-30740889,30740968-30741033,
30741296-30741539,30741639-30741691
Length = 369
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 513 KCAICHDYDLCSKCEAAG 566
KC+ C D+DLC +C + G
Sbjct: 67 KCSKCPDFDLCVECFSVG 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,692,308
Number of Sequences: 37544
Number of extensions: 379223
Number of successful extensions: 915
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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