Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0516.Seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   1e-05
SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)             42   4e-04
SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)                      34   0.13 
SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)                    33   0.22 
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    33   0.22 
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)                      32   0.38 
SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)                      32   0.51 
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)                  29   4.7  
SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)                  29   4.7  
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)                28   6.2  
SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         28   8.3  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         28   8.3  

>SB_52196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 21/35 (60%), Positives = 25/35 (71%)
 Frame = +3

Query: 501 GFPYKCAICHDYDLCSKCEAAGNHNEHCMVRLPTP 605
           G  +KC IC D+DLC KCEA G H EH M+R+ TP
Sbjct: 123 GTRFKCVICPDFDLCMKCEAKGLHREHEMLRICTP 157



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 16/51 (31%), Positives = 32/51 (62%)
 Frame = +2

Query: 119 KVYAFFEENAQPEVRRFGVEKTVVSSFHYLNAKLQEVYPKLRNKILKYHGK 271
           K Y   +++   E+RRF V++ V +++ YL  K+Q V+P +R + ++ + K
Sbjct: 6   KAY-LLQDDGNQEIRRFAVDEGVSTNYDYLVQKVQSVFPNVRGRGIRLYWK 55



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = +1

Query: 430 PENTD---GNTAVHSGVVCNVCNSPVVG 504
           PE +D    + A+H GVVC+ CN  ++G
Sbjct: 96  PEGSDDSGASNAIHPGVVCDGCNVNIMG 123


>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 480 CMQLSSCGFPYKCAICHDYDLCSKCEAAGNHNE-HCM--VRLPTPDMS 614
           C     CG  YKC  C DYD+C +CE+   HN  H    +R+P P ++
Sbjct: 115 CQASPICGVRYKCGNCVDYDICERCESQDRHNSTHAFIKIRIPIPPLA 162


>SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)
          Length = 742

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = +3

Query: 480 CMQLSSCGFPYKCAICHDYDLCSKCEAAGNHN-EHCMVRLPTPDMSRTLIKAAIKRS--- 647
           C      G  +KCA C +YDLCS C     H+  H   R+  P   R L++A  K     
Sbjct: 5   CRMQPIFGMRWKCAECGNYDLCSTCYHGDKHHLRHRFYRINQPGAERILVEARRKSKKVT 64

Query: 648 -RHIFQN-RVATHVD-QW 692
            R IF   RV   VD QW
Sbjct: 65  VRGIFPGARVVRGVDWQW 82


>SB_808| Best HMM Match : ZZ (HMM E-Value=2.9e-05)
          Length = 681

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
 Frame = +3

Query: 480 CMQLSSC------GFPYKCAICHDYDLCSKC 554
           C+   SC      G  +KC IC+DYDLC+ C
Sbjct: 291 CVSCDSCNKGNFRGKRFKCLICYDYDLCATC 321


>SB_8334| Best HMM Match : MIB_HERC2 (HMM E-Value=0)
          Length = 636

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +3

Query: 477 QCMQLSSCGFPYKCAICHDYDLCSKCEAAGNHN-EHCMVRLPTPDMS 614
           +C Q    G  ++CA C  Y+LC+ C     H  +H      +PD S
Sbjct: 85  ECHQQGIKGMRWQCADCEGYNLCTACYMGDKHELQHGFYLHESPDSS 131


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 477 QCMQLSSCGFPYKCAICHDYDLCSKCEAAGNHN-EHCMVRLPTPDMSRT 620
           +C Q    G  ++CA C  Y+LC+       H  +H      +PD SRT
Sbjct: 677 ECHQQGIKGMRWQCADCEGYNLCTASYMGDKHELQHGFYLHESPDSSRT 725


>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
          Length = 1338

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 525 CHDYDLCSKCEA-AGNHNE-HCMVRL 596
           C DYDLC  CEA  G HNE H  ++L
Sbjct: 624 CADYDLCETCEAIPGVHNELHAFLKL 649


>SB_30003| Best HMM Match : DUF906 (HMM E-Value=0)
          Length = 2276

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +3

Query: 510  YKCAICHDYDLCSKCEAAGNHNEHCMVRL 596
            Y C  C DYDLC  C     H EH M RL
Sbjct: 1447 YHCNECEDYDLCVPCYDEKGH-EHKMERL 1474


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = +3

Query: 501  GFPYKCAICHDYDLCSKCEAAGNHNEHCMVRLPTP 605
            G  +KC  C D+D C  C      + H   R   P
Sbjct: 1194 GSRFKCKTCPDFDYCENCFRVRRSHRHPFYRFDEP 1228


>SB_49401| Best HMM Match : WD40 (HMM E-Value=1.6e-22)
          Length = 453

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = +1

Query: 364 HCKNPDIRDD-DCEIEITATTMFPENTD----GNTAVHSGVVCNVCNSPVVGF-LTSAQF 525
           HC  PD+ DD D E  +T+    P +TD     N      ++ + C S ++ F L SA  
Sbjct: 189 HCLRPDVLDDPDTEDPVTSLEWDPLSTDYLLVTNACFGVRLIDSSCMSTIMNFKLPSAAL 248

Query: 526 -VMTTTCAPSARPPGITMNT 582
            + T +  P+A    +T +T
Sbjct: 249 KIHTISWVPTAPGMFVTGDT 268


>SB_42279| Best HMM Match : WD40 (HMM E-Value=2.2e-10)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = +1

Query: 364 HCKNPDIRDD-DCEIEITATTMFPENTD----GNTAVHSGVVCNVCNSPVVGF-LTSAQF 525
           HC  PD+ DD D E  +T+    P +TD     N      ++ + C S ++ F L SA  
Sbjct: 27  HCLRPDVLDDPDTEDPVTSLEWDPLSTDYLLVTNACFGVRLIDSSCMSTIMNFKLPSAAL 86

Query: 526 -VMTTTCAPSARPPGITMNT 582
            + T +  P+A    +T +T
Sbjct: 87  KIHTISWVPTAPGMFVTGDT 106


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/73 (32%), Positives = 32/73 (43%)
 Frame = +1

Query: 403  IEITATTMFPENTDGNTAVHSGVVCNVCNSPVVGFLTSAQFVMTTTCAPSARPPGITMNT 582
            I    TT  P +TDG TAV    +     SP+  + T+A    T+T   +  P      T
Sbjct: 1309 ISTDGTTAVPISTDGTTAVPRS-MDGTTASPLSTYGTTAG--PTSTDGTTTSPMSTDGTT 1365

Query: 583  AWSVSPHRTCRAP 621
            A  +S  RT  AP
Sbjct: 1366 AAPMSKDRTTAAP 1378


>SB_49695| Best HMM Match : Homeobox (HMM E-Value=0.068)
          Length = 919

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 504 FPYKCAICHDYDLCSKCE 557
           FP++C+  HDY+ CS CE
Sbjct: 346 FPFECSHDHDYE-CSSCE 362


>SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 505 FLTSAQFVMTTTCAPSARPPGITMNTAWSVSPHRTCRA 618
           F+    F++     PS  P G TM  A+  +P  TC+A
Sbjct: 104 FIHWVAFILIFLNIPSDAPTGGTMKVAYLHAPKNTCKA 141


>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 251  SCSAALGRLLAVSHSNNENCSQQFSQHQISLLLAEHSPQKMHKL 120
            SC+A+ G ++  +H   E+CS   S    SL   E  PQ   K+
Sbjct: 905  SCNASTGEMICHAHWYGESCSTNCSPQNNSLGHFECDPQSGIKI 948


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 460 HSGVVCNVCNSPVVGFLTSAQFVMTTTCA-PSARPPGI 570
           H+ V+C +  +P+ G     Q  M T+ A PS  PP +
Sbjct: 123 HAAVICYLLENPIPGTPPDLQLSMHTSMAIPSVPPPRV 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,783,305
Number of Sequences: 59808
Number of extensions: 467714
Number of successful extensions: 1285
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)