Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0516.Seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    37   0.015
At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identic...    33   0.24 
At5g54040.1 68418.m06721 DC1 domain-containing protein contains ...    32   0.41 
At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identic...    32   0.41 
At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identic...    32   0.41 
At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identic...    32   0.41 
At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f...    30   1.7  
At5g54020.1 68418.m06719 expressed protein                             29   2.2  
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ...    29   2.9  
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    29   2.9  
At1g05150.1 68414.m00518 calcium-binding EF hand family protein ...    29   3.9  
At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger) fa...    28   5.1  
At5g54050.1 68418.m06722 DC1 domain-containing protein                 28   6.8  
At5g47730.1 68418.m05897 SEC14 cytosolic factor, putative / poly...    28   6.8  
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ...    27   8.9  

>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
            to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
            CREB-binding protein GB:S39162 from [Homo sapiens]
          Length = 1670

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 480  CMQLSSCGFPYKCAICHDYDLCSKCEAAGNHNEHCMVRLPT 602
            C Q       ++C +C DYD+C+ C + G ++ H ++  P+
Sbjct: 1507 CQQELETAQGWRCEVCPDYDVCNACYSKGINHPHSIISRPS 1547


>At3g07740.1 68416.m00936 transcriptional adaptor (ADA2a) identical
           to transcriptional adaptor ADA2a [Arabidopsis thaliana]
           gi|13591698|gb|AAK31319
          Length = 548

 Score = 32.7 bits (71), Expect = 0.24
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 510 YKCAICHDYDLCSKCEAAG 566
           +KCA+C D+DLC +C + G
Sbjct: 66  FKCAVCMDFDLCVECFSVG 84


>At5g54040.1 68418.m06721 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 596

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 507 PYKCAICHDYDLCSKCEAAGNHNEH 581
           P  C +C DY LC++C A     +H
Sbjct: 436 PLNCTVCDDYSLCTRCAALPRKVKH 460


>At4g16420.3 68417.m02486 transcriptional adaptor (ADA2b) identical
           to transcriptional adaptor ADA2b [Arabidopsis thaliana]
           gi|13591700|gb|AAK31320
          Length = 486

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 513 KCAICHDYDLCSKCEAAG 566
           KCA+C D+DLC +C + G
Sbjct: 61  KCAVCPDFDLCIECMSVG 78


>At4g16420.2 68417.m02485 transcriptional adaptor (ADA2b) identical
           to transcriptional adaptor ADA2b [Arabidopsis thaliana]
           gi|13591700|gb|AAK31320
          Length = 483

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 513 KCAICHDYDLCSKCEAAG 566
           KCA+C D+DLC +C + G
Sbjct: 61  KCAVCPDFDLCIECMSVG 78


>At4g16420.1 68417.m02484 transcriptional adaptor (ADA2b) identical
           to transcriptional adaptor ADA2b [Arabidopsis thaliana]
           gi|13591700|gb|AAK31320
          Length = 487

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 513 KCAICHDYDLCSKCEAAG 566
           KCA+C D+DLC +C + G
Sbjct: 61  KCAVCPDFDLCIECMSVG 78


>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
            (ZZ type) family protein contains Pfam profiles PF02135:
            TAZ zinc finger, PF00569: Zinc finger, ZZ type
          Length = 1706

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 501  GFPYKCAICHDYDLCSKC 554
            G  ++C +C DYD+C+ C
Sbjct: 1543 GLGWRCEVCPDYDVCNAC 1560


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = +3

Query: 507 PYKCAICHDYDLCSKCEAAGNHNEH 581
           P  C +C DY LC +C       +H
Sbjct: 422 PLSCTVCDDYSLCMRCTTLPRKVKH 446


>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 495

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +3

Query: 492 SSCGFPYKCAICHDYDLCSKCEAAGNHNEH 581
           +  G+   C +C DY LC  C    +  +H
Sbjct: 339 TKAGYDLNCIVCDDYSLCMTCATLPSKVKH 368


>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein 2
            (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
            and PF00569: Zinc finger, ZZ type; identical to cDNA
            p300/CBP acetyltransferase-related protein 2  GI:12597460
          Length = 1691

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 501  GFPYKCAICHDYDLCSKC--EAAGNHNEHCMVRLPT 602
            G  ++C +C DYD+C+ C     G ++ H +   P+
Sbjct: 1528 GQGWRCEVCPDYDVCNACFSRDGGVNHPHKLTNHPS 1563


>At1g05150.1 68414.m00518 calcium-binding EF hand family protein low
           similarity to O-linked GlcNAc transferase [Homo sapiens]
            GI:2266994; contains Pfam profiles PF00036: EF hand,
           PF00515: TPR Domain
          Length = 808

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
 Frame = +1

Query: 388 DDDCEIEITATTMFPENTDGNTAVHSGVVCNVCNSPVVGFL---TSAQFVMTTTCAPSAR 558
           D D    I +T +  E  D N   H   VC+VC  PV+G       A+F +   C    +
Sbjct: 711 DPDWGFGIMSTILKLEANDRNR--HGNQVCSVCRYPVIGSRFKEVKARFSLCNQCYGEGK 768

Query: 559 PP 564
            P
Sbjct: 769 VP 770


>At5g57740.1 68418.m07218 zinc finger (C3HC4-type RING finger)
           family protein / ankyrin repeat family protein contains
           Pfam profile: PF00097 zinc finger, C3HC4 type (RING
           finger) and Pfam profile: PF00023 ankyrin repeat
          Length = 508

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
 Frame = +1

Query: 394 DCEIEITATTMFPENTDGNTAVHSGVVCNVCNSPVVGFLTSAQFVMTTTCAPSARPP--- 564
           +C + ++ T++    T   T     V C +C + +V F        TT  + S+R     
Sbjct: 343 NCALYLSTTSITSSKTSNVTP--GSVPCPLCRNGIVSFTKLPHTTATTRTSTSSRTSISL 400

Query: 565 ------GITMNTAWSVSPHRTCRAP*SRRQLRDP 648
                    ++TA   +PH +C+   SR   R P
Sbjct: 401 SFCTCSSDVLDTALLTNPHYSCKPVVSRTGSRTP 434


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = +3

Query: 507 PYKCAICHDYDLCSKCEAAGNHNEH 581
           P  C +C +Y LC +C       +H
Sbjct: 445 PLNCTVCDEYSLCMRCATLPRKVKH 469


>At5g47730.1 68418.m05897 SEC14 cytosolic factor, putative /
           polyphosphoinositide-binding protein, putative similar
           to polyphosphoinositide binding protein SEC14 homolog
           Ssh1p  (GI:2739044) {Glycine max}
          Length = 341

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 528 HDYDLCSKCEAAGNHNEHCMVRLPTPDMSRTLIKAAIKRSRHIFQNR 668
           H Y+   + E A   + H  V  P P+  R +I   I+   H F+NR
Sbjct: 275 HHYETQGQAEPAKQGSFH--VGFPEPEAERCVIAKTIESELHKFENR 319


>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 470

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +3

Query: 516 CAICHDYDLCSKCEAAGNHNEH 581
           C +C DY LC KC       +H
Sbjct: 336 CTVCDDYALCMKCATLPRKVKH 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,992,754
Number of Sequences: 28952
Number of extensions: 301224
Number of successful extensions: 750
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)