Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0515.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0970 - 33179180-33179210,33179297-33179441,33180307-331803... 34 0.046
03_05_1050 - 29966031-29966076,29966180-29966232,29966420-299668... 33 0.11
02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852... 30 0.75
04_04_1570 - 34492944-34493159,34493668-34493842,34493964-344940... 29 2.3
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783... 29 2.3
02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483 29 2.3
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 4.0
09_01_0050 + 853712-855368,855440-856113 28 4.0
11_07_0008 + 27296049-27296395,27296681-27296963,27297575-27297595 27 5.3
09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818 27 5.3
03_01_0288 + 2230927-2231631,2231735-2231907,2232047-2232188 27 5.3
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 27 7.0
>02_05_0970 -
33179180-33179210,33179297-33179441,33180307-33180362,
33180650-33180691,33180814-33180866,33181059-33181490,
33181630-33181707,33181785-33181870,33183588-33183689,
33183754-33183960,33184976-33185336,33185463-33185626,
33185709-33185817,33186468-33186485
Length = 627
Score = 34.3 bits (75), Expect = 0.046
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 275 DLSEFPSLTDR---CAGDQXXXXXXXXXGSKPYVGMVKQPTSEQSEFTMSSEDFPALPG 442
D+S+FP LT R G Q G VG V + EF++ +EDFPALPG
Sbjct: 265 DMSDFPQLTGRPSSAGGPQGQYGSLRKQG----VG-VNTIVQQNQEFSIQNEDFPALPG 318
>03_05_1050 -
29966031-29966076,29966180-29966232,29966420-29966845,
29966983-29967060,29967135-29967220,29969054-29969155,
29969221-29969427,29970528-29970885,29971011-29971174,
29971258-29971366,29971595-29971600
Length = 544
Score = 33.1 bits (72), Expect = 0.11
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 275 DLSEFPSLTDR---CAGDQXXXXXXXXXGSKPYVGMVKQPTSEQSEFTMSSEDFPALPG 442
D+++FP LT R G Q G VG V + EF++ +EDFPALPG
Sbjct: 260 DMNDFPQLTGRPSSAGGPQGQYGSLRKQG----VG-VNTIVQQNQEFSIQNEDFPALPG 313
>02_03_0074 +
14781763-14784191,14784888-14784978,14785180-14785230,
14785882-14785947,14786509-14786610
Length = 912
Score = 30.3 bits (65), Expect = 0.75
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 222 NYHSVFGEGGDHQHHHFWT*ANFHH*QIDARVTKHPL-QHHHLRALNPMLVW 374
++HS + H HHH + + H A P+ HHHL ++P V+
Sbjct: 158 HHHSQPQQPQSHHHHHHHSGSRKRHSMPPAYTAAEPVSHHHHLVVVDPSTVY 209
>04_04_1570 -
34492944-34493159,34493668-34493842,34493964-34494068,
34494454-34494623,34494760-34494830,34494950-34496799,
34497003-34497052,34497147-34497263
Length = 917
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 288 NSLRSRSGGVDGHHLHQKLNGS 223
N++ SRS G++GHHL + +GS
Sbjct: 589 NAVMSRSHGMEGHHLQSQDSGS 610
>04_04_1197 +
31672019-31672325,31672431-31672740,31673334-31678335,
31678677-31678715
Length = 1885
Score = 28.7 bits (61), Expect = 2.3
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 283 RISITNR*MRG*PSTHYSTTTSGL*TLCWYGEAADIGTIRIYNVFGRFSGVT 438
R S +N+ +G P +TT+S L YG AA++ TI+ + R +G+T
Sbjct: 288 RSSSSNQSRQGTPPATNATTSSYLPEPIVYGRAAEMETIKQLIMSNRSNGIT 339
>02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483
Length = 475
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 106 LFGQRAFADRRXQCQQLYLKLILIQCRV*VICYGST 213
L G FAD C+QL LIL QCR+ +C T
Sbjct: 206 LAGDDFFADLFSHCKQLRY-LILEQCRIGALCLAGT 240
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 193 VICYGSTLATTTIQFLVKVVTINTTTSGP 279
V C+ S L T+ +K+ + N+TTSGP
Sbjct: 1373 VSCFSSWLEFRTLGHSMKIESTNSTTSGP 1401
>09_01_0050 + 853712-855368,855440-856113
Length = 776
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = +1
Query: 1 VSGHVTPTFGGALSPGXN--STAMXGGAPPSMASR 99
++G + P FGGA N S + G PP MASR
Sbjct: 207 LNGTLPPDFGGAALRYVNLSSNRLAGAIPPEMASR 241
>11_07_0008 +
27296049-27296395,27296681-27296963,27297575-27297595
Length = 216
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 7 GHVTPTFGGALSPGXNSTAMXGGAPPSMASR 99
G P GGA PG TA+ GG ++ R
Sbjct: 6 GDAAPPGGGAGDPGGGETALLGGGGAALLGR 36
>09_02_0273 - 6577272-6577292,6577904-6578186,6578472-6578818
Length = 216
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 7 GHVTPTFGGALSPGXNSTAMXGGAPPSMASR 99
G P GGA PG TA+ GG ++ R
Sbjct: 6 GDAAPPGGGAGDPGGGETALLGGGGAALLGR 36
>03_01_0288 + 2230927-2231631,2231735-2231907,2232047-2232188
Length = 339
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 297 SDGNSLRSRSGGVDGHHLHQKLNGSCCQR 211
SDGN + G D HH H +G C R
Sbjct: 70 SDGNLAALGASGDDDHHHHLPPSGKCAPR 98
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 28 GGALSPGXNSTAMXGGAPPSMAS 96
GG +PG +TA GAPP+ A+
Sbjct: 82 GGGSAPGGAATAQREGAPPAAAT 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,067,580
Number of Sequences: 37544
Number of extensions: 214152
Number of successful extensions: 665
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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