Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0515.Seq
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29561-5|CAA82668.1| 395|Caenorhabditis elegans Hypothetical pr... 31 0.39
U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily ass... 29 1.2
U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast... 29 1.2
U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast... 29 1.2
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 29 1.6
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 29 1.6
Z68270-13|CAD21675.1| 225|Caenorhabditis elegans Hypothetical p... 29 2.1
Z68270-12|CAA92573.1| 205|Caenorhabditis elegans Hypothetical p... 29 2.1
Z68213-7|CAD21589.1| 225|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z68213-6|CAA92442.1| 205|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF202932-1|AAK69382.1| 225|Caenorhabditis elegans ICln2 protein. 29 2.1
AF202931-1|AAK69381.1| 205|Caenorhabditis elegans ICln1 protein. 29 2.1
Z19154-6|CAC35885.2| 388|Caenorhabditis elegans Hypothetical pr... 27 8.3
>Z29561-5|CAA82668.1| 395|Caenorhabditis elegans Hypothetical
protein R10E12.2 protein.
Length = 395
Score = 31.1 bits (67), Expect = 0.39
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 231 SVFGEGGDHQHHHFWT*ANFHH*QIDARVTKHPLQHHH 344
S+ G GG HQ+ H + N HH Q + HP + +H
Sbjct: 304 SLHGSGGSHQNPHMY---NSHHHQHQQQQNAHPSEMYH 338
>U41993-7|AAA83450.2| 733|Caenorhabditis elegans Temporarily
assigned gene nameprotein 153, isoform b protein.
Length = 733
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/14 (78%), Positives = 14/14 (100%)
Frame = +2
Query: 401 EFTMSSEDFPALPG 442
+FT++SEDFPALPG
Sbjct: 105 KFTITSEDFPALPG 118
>U39848-5|AAL11099.1| 367|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform b protein.
Length = 367
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 371 MVKQPTSEQSEFTMSSEDFPALPG 442
M P+ EF + +EDFPALPG
Sbjct: 10 MRSDPSLTNPEFQIQNEDFPALPG 33
>U39848-4|AAA80691.1| 444|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 2, isoform a protein.
Length = 444
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 371 MVKQPTSEQSEFTMSSEDFPALPG 442
M P+ EF + +EDFPALPG
Sbjct: 87 MRSDPSLTNPEFQIQNEDFPALPG 110
>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical protein
C03D6.4 protein.
Length = 1390
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 4 SGHVTPT-FGGALSPGXNSTAMXGGAPPSMASRATLFGQRAFAD 132
SG T + FGG +P N++ GGA + A +++FG A A+
Sbjct: 1336 SGQKTSSLFGGGATPQTNTSIFGGGANTTPAPTSSVFGGGASAN 1379
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 444 VPGNAGKSSEDIVNSDCSDVGCFTIPT*GLEP 349
VPG GK +ED+ N+ GCFT P L P
Sbjct: 171 VPGFDGKDAEDVQNT--PPTGCFTCPQGPLGP 200
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -3
Query: 444 VPGNAGKSSEDIVNSDCSDVGCFTIPT*GLEP 349
VPG GK +ED+ N+ GCFT P L P
Sbjct: 171 VPGFDGKDAEDVQNT--PPTGCFTCPQGPLGP 200
>Z68270-13|CAD21675.1| 225|Caenorhabditis elegans Hypothetical
protein C01F6.8b protein.
Length = 225
Score = 28.7 bits (61), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 222 NYHSVFGEGGDHQHHH 269
N +FG G HQHHH
Sbjct: 203 NMQRIFGRGDQHQHHH 218
>Z68270-12|CAA92573.1| 205|Caenorhabditis elegans Hypothetical
protein C01F6.8a protein.
Length = 205
Score = 28.7 bits (61), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 222 NYHSVFGEGGDHQHHH 269
N +FG G HQHHH
Sbjct: 183 NMQRIFGRGDQHQHHH 198
>Z68213-7|CAD21589.1| 225|Caenorhabditis elegans Hypothetical
protein C01F6.8b protein.
Length = 225
Score = 28.7 bits (61), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 222 NYHSVFGEGGDHQHHH 269
N +FG G HQHHH
Sbjct: 203 NMQRIFGRGDQHQHHH 218
>Z68213-6|CAA92442.1| 205|Caenorhabditis elegans Hypothetical
protein C01F6.8a protein.
Length = 205
Score = 28.7 bits (61), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 222 NYHSVFGEGGDHQHHH 269
N +FG G HQHHH
Sbjct: 183 NMQRIFGRGDQHQHHH 198
>AF202932-1|AAK69382.1| 225|Caenorhabditis elegans ICln2 protein.
Length = 225
Score = 28.7 bits (61), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 222 NYHSVFGEGGDHQHHH 269
N +FG G HQHHH
Sbjct: 203 NMQRIFGRGDQHQHHH 218
>AF202931-1|AAK69381.1| 205|Caenorhabditis elegans ICln1 protein.
Length = 205
Score = 28.7 bits (61), Expect = 2.1
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 222 NYHSVFGEGGDHQHHH 269
N +FG G HQHHH
Sbjct: 183 NMQRIFGRGDQHQHHH 198
>Z19154-6|CAC35885.2| 388|Caenorhabditis elegans Hypothetical
protein C40H1.7 protein.
Length = 388
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 231 SVFGEGGDHQHHHFWT*ANFH 293
SV G GDHQ++ W NF+
Sbjct: 137 SVRGSHGDHQYYDLWKIGNFN 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,657,234
Number of Sequences: 27780
Number of extensions: 172420
Number of successful extensions: 419
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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