Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0515.Seq
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ... 34 0.039
At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5 ... 33 0.089
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein... 31 0.36
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein... 31 0.36
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein... 31 0.36
At2g35270.1 68415.m04326 DNA-binding protein-related contains Pf... 28 3.4
At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family pr... 27 4.4
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa... 27 4.4
At4g12370.1 68417.m01955 hypothetical protein 27 5.9
>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
(GI:1658504) [Drosophila melanogaster]
Length = 444
Score = 34.3 bits (75), Expect = 0.039
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +2
Query: 260 TPPLLDLSEFPSLTDR--CAGDQXXXXXXXXXGSKPYVGMVKQPTSEQS-EFTMSSEDFP 430
T P ++FP LT R AG Q GS+ G+ P +Q+ EF++ +EDFP
Sbjct: 130 TSPFDINNDFPQLTSRPSSAGSQGQL------GSRLKQGLGISPIVQQNQEFSIQNEDFP 183
Query: 431 ALPG 442
ALPG
Sbjct: 184 ALPG 187
>At5g59710.1 68418.m07485 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 / NOT3
/ NOT5 family
Length = 556
Score = 33.1 bits (72), Expect = 0.089
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 254 PSTPPLLDLS-EFPSLTDRCAGDQXXXXXXXXXGSKPYVGMVKQPTSEQSEFTMSSEDFP 430
P+ L D++ +FP LT R GS G+ + EF++ +EDFP
Sbjct: 203 PNDSSLFDINNDFPQLTSRPGS---AGGTQGHLGSLRKQGLGVPLVQQNQEFSIQNEDFP 259
Query: 431 ALPG 442
ALPG
Sbjct: 260 ALPG 263
>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 219 NNYHSVFGEGGDHQHHHFWT*ANFHH*QIDARVTKHPLQHHH 344
+++H DH HHH + +H + + HPL HHH
Sbjct: 182 HHHHQYISTNNDHDHHHHIDSNSNNH----SPLILHPLDHHH 219
>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 219 NNYHSVFGEGGDHQHHHFWT*ANFHH*QIDARVTKHPLQHHH 344
+++H DH HHH + +H + + HPL HHH
Sbjct: 182 HHHHQYISTNNDHDHHHHIDSNSNNH----SPLILHPLDHHH 219
>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 31.1 bits (67), Expect = 0.36
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 219 NNYHSVFGEGGDHQHHHFWT*ANFHH*QIDARVTKHPLQHHH 344
+++H DH HHH + +H + + HPL HHH
Sbjct: 182 HHHHQYISTNNDHDHHHHIDSNSNNH----SPLILHPLDHHH 219
>At2g35270.1 68415.m04326 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 285
Score = 27.9 bits (59), Expect = 3.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +3
Query: 204 RFNAGNNYHSVFGEGGDHQHHH 269
+F N++ G GG+H HHH
Sbjct: 23 QFTTDNHHEDDGGAGGNHHHHH 44
>At2g16910.1 68415.m01948 basic helix-loop-helix (bHLH) family
protein
Length = 571
Score = 27.5 bits (58), Expect = 4.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 252 DHQHHHFWT*ANFHH*QIDARVTKHPLQHHHLRALN 359
DHQHH N HH D ++ + HHH + +N
Sbjct: 537 DHQHH------NGHHHPFDHQMNQSAHHHHHHQHIN 566
>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
profiles: PF04096 nucleoporin autopeptidase, PF03093
nucleoporin FG repeat family
Length = 1041
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = +1
Query: 16 TPTFGGALSPG-XNSTAMXGGAPPSMA-SRATLFGQR 120
TPTFG + SP NST G +P S ++ FGQ+
Sbjct: 76 TPTFGASSSPAFGNSTPAFGASPASSPFGGSSGFGQK 112
>At4g12370.1 68417.m01955 hypothetical protein
Length = 300
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 394 FRCRLLHHTNIGFRARRWWCCSG 326
FR L+H+N+ + RR++C G
Sbjct: 121 FRSETLNHSNVVYAKRRFYCLDG 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,135,588
Number of Sequences: 28952
Number of extensions: 156027
Number of successful extensions: 427
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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