Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0513.Seq
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.07 |||mitochondrial Mam33 family protein|Schizosaccharom... 29 0.11
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 1.0
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp... 25 2.4
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 24 4.2
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 24 4.2
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 24 5.5
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 24 5.5
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 23 7.3
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 23 7.3
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 23 9.6
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 23 9.6
>SPBC776.07 |||mitochondrial Mam33 family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 29.5 bits (63), Expect = 0.11
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +1
Query: 151 QVTALHQFFDEEDVFFAYGNERVNQEDFELEFEEKKPY--PSAEKL 282
+ TAL FD E+++F+ + + + E E++ +K Y PS ++L
Sbjct: 175 EATALDDGFDIENIYFSKDIDMLTSDSLEAEWKRRKQYLGPSFKEL 220
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 26.2 bits (55), Expect = 1.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 132 FHIVWDSSYSSASILRRGRCVFCIW 206
FH VW SS +S IL +F IW
Sbjct: 224 FHNVWSSSSTSVPILSVVLALFFIW 248
>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 2.4
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 1 AT*IKTTFQVCRLLLNKRNSPTLEHALAAITDCVKLDTGCVRKVFT 138
+T I + QV + +NKR ++ + + +D + LDT + +FT
Sbjct: 298 STVIDQSSQVSSIFVNKRLRKSVNNQAISRSDSLSLDTPKIDSLFT 343
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 133 KLSLHIPYRVSRNP*SQPRHARVS 62
K LHIPYR ++N R+A ++
Sbjct: 162 KTHLHIPYRENKNLTGTARYASIN 185
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 24.2 bits (50), Expect = 4.2
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 67 LEHALAAITDCVKLDTGC 120
L+ L ++T C K DTGC
Sbjct: 388 LKKQLDSLTHCCKTDTGC 405
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 23.8 bits (49), Expect = 5.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 111 YGMCKESFHIVWDSSYSSASILR 179
Y M + S H+++ + ++SAS+LR
Sbjct: 413 YDMSRCSDHVLFHAGFASASLLR 435
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 23.8 bits (49), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 143 DDVKTFLTHPVSSFTQ 96
+ +K+F THP+ SF Q
Sbjct: 255 ESLKSFTTHPIYSFIQ 270
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -3
Query: 183 LVEELMQSCNLSPRRCENFPY 121
LVEE+++ +S +RCE +P+
Sbjct: 594 LVEEMVR-LGISRKRCERYPF 613
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 23.4 bits (48), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 205 GNERVNQEDFELEFEEKKPYPSAEKL 282
GN+RV E+ +EFE K+ S +L
Sbjct: 169 GNKRVMYEEGWIEFESKRVAKSVAEL 194
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 292 LVMGVFRHWDTAFSLQILVRNLL 224
LV G R W+ + + ILV LL
Sbjct: 402 LVFGDMRTWNPDYKIDILVSELL 424
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 23.0 bits (47), Expect = 9.6
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = +3
Query: 78 LGCDHGLRETRYGMCKESFHI---VWDSSYSSASILRRGRCV 194
L C + R +E+F + +WD S +I++ RCV
Sbjct: 82 LPCKASTEQKRKERRQEAFELGKKLWDEGKKSQAIMQFSRCV 123
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,208,894
Number of Sequences: 5004
Number of extensions: 21784
Number of successful extensions: 76
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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