Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0513.Seq
(299 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 30 0.38
03_05_0049 - 20277234-20277251,20277670-20277795,20278085-202781... 27 2.1
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472... 27 2.1
03_06_0631 + 35193737-35193906,35194010-35194076,35194237-351944... 26 4.7
03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332 26 4.7
01_01_0879 + 6896587-6896701,6896819-6897005,6897475-6897774,689... 26 4.7
07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,344... 26 6.3
02_01_0627 + 4708648-4708836,4708975-4709064,4709579-4709664,471... 25 8.3
01_05_0227 - 19512866-19514983 25 8.3
>08_02_1102 +
24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 29.9 bits (64), Expect = 0.38
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 146 PDDVKTFLTHPVSSFTQSVIAAKACSSV 63
P D+ FL P S+F Q+V+ + CS V
Sbjct: 316 PSDLNNFLFSPDSNFRQTVVELQGCSDV 343
>03_05_0049 -
20277234-20277251,20277670-20277795,20278085-20278153,
20278233-20278280,20278413-20278494,20278583-20278662,
20278764-20278835,20278912-20279006,20280396-20280477,
20280604-20280963
Length = 343
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 133 KLSLHIPYRVSRNP*SQPRHARVSGYY 53
+L++H P V R+P + P A +GYY
Sbjct: 35 RLNVHAPEFVPRSPAASPMAAAAAGYY 61
>01_06_0864 -
32546696-32546803,32546881-32546961,32547134-32547250,
32548264-32548338,32548618-32548680,32549122-32549187,
32549254-32549325,32549403-32549504,32549588-32549765,
32549871-32549926,32551578-32551688,32551797-32551865,
32551960-32552068,32552176-32552327,32552398-32552475,
32554257-32554379,32555527-32555646,32555729-32555809,
32555881-32556027,32556112-32556190,32557223-32557297,
32558004-32558113,32558984-32559082,32559700-32559815,
32559914-32560022,32560098-32560229,32560389-32560591,
32561428-32561585,32561668-32561797,32562529-32562607,
32562806-32562829
Length = 1073
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 187 DVFFAYGNERVNQEDFELEFEEKKPYPSAEKLP 285
D+++ + +ERV +ED + EE+ Y E+LP
Sbjct: 410 DIWYKFDDERVTKEDMKRALEEQ--YGGEEELP 440
>03_06_0631 +
35193737-35193906,35194010-35194076,35194237-35194426,
35194571-35194767
Length = 207
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 211 ERVNQEDFELEFEEKKPYPSAEKLPLQEV 297
E N+E+ E E E+ +PY + LP +EV
Sbjct: 30 EDENEEEEEEEEEDPQPYVPSRPLPSEEV 58
>03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332
Length = 190
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 143 DDVKTFLTHPVSSFTQSVI 87
DD K FLT+ V FT+S+I
Sbjct: 27 DDCKHFLTYMVGDFTESMI 45
>01_01_0879 +
6896587-6896701,6896819-6897005,6897475-6897774,
6897877-6898133,6898596-6898825,6899122-6899247,
6900195-6900374,6901079-6901216,6901515-6901670,
6902409-6902699,6902923-6903162
Length = 739
Score = 26.2 bits (55), Expect = 4.7
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 43 LNKRNSPTLEHAL--AAITDCVKLDTGCVRKVFTSSGTQVTALHQFFDE--EDVFFAYGN 210
+NK S EH + AA + +L G + +G + L++ ED F N
Sbjct: 228 MNKSESLD-EHGVLTAAAGEAHRLGFGDPVAISAETGLGMAELYETLRPLFEDYMFQLTN 286
Query: 211 ERVNQEDFELEFEEKKPYPSAEKLPLQ 291
+NQ+D E E + KLPLQ
Sbjct: 287 NGLNQDDPTSEAETEAHEGDESKLPLQ 313
>07_01_0454 +
3443871-3444024,3444268-3444356,3445482-3445557,
3445875-3445880,3445984-3446131,3446237-3446394,
3446473-3446676,3446803-3447038,3447227-3447439,
3447984-3448082,3448262-3448371,3448581-3448655,
3449407-3449485,3449563-3449709,3449785-3449865,
3449975-3450094,3450580-3450702,3451382-3451459,
3451586-3451674,3451760-3451868,3452117-3452227,
3452557-3452612,3452697-3452874,3452971-3453072,
3453160-3453231,3453350-3453415,3453502-3453567,
3453676-3453759,3454638-3454754,3455753-3455827,
3455912-3455995,3456138-3456179
Length = 1148
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 187 DVFFAYGNERVNQEDFELEFEEKKPYPSAEKLP 285
D +F + +ERV +ED + EE+ Y E+LP
Sbjct: 521 DQWFKFDDERVTKEDAKRALEEQ--YGGEEELP 551
>02_01_0627 +
4708648-4708836,4708975-4709064,4709579-4709664,
4710108-4710332,4711251-4711314,4711793-4712491,
4712657-4712764,4712920-4713051,4713183-4713359,
4713920-4713973,4714072-4714134,4714227-4714928,
4715048-4715175,4715563-4715839
Length = 997
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 229 DFELEFEEKKPYPSAEKLPL 288
DFE++ EE+ P P++E P+
Sbjct: 465 DFEMDGEEENPCPASEDPPI 484
>01_05_0227 - 19512866-19514983
Length = 705
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 96 IRDRSQGMLECRAITFIQQ*PTHLKRCF 13
+ D + + C +++I P HLKRCF
Sbjct: 235 VEDEERKIFACLLLSYIHL-PHHLKRCF 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,626,429
Number of Sequences: 37544
Number of extensions: 133382
Number of successful extensions: 353
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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