Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0513.Seq
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   39   7e-04
SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   2.8  
SB_35429| Best HMM Match : Laminin_EGF (HMM E-Value=5.3e-17)           27   3.7  
SB_58206| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)                   27   3.7  
SB_30274| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00093)         26   4.9  
SB_12093| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_35793| Best HMM Match : rve (HMM E-Value=4.3)                       26   6.5  
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)                      25   8.6  
SB_37465| Best HMM Match : UPF0075 (HMM E-Value=1.2)                   25   8.6  
SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)                   25   8.6  

>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = +1

Query: 31  CRLLLNKRNSPTLEHALAAITDCVKLDTGC-VRKVFTSSGTQVTALHQFFDEEDVFFA 201
           C++LLN + + + E  L  I++ +KL +   V+ +FT  GT+V  + Q F     +FA
Sbjct: 260 CKILLNSKTTKSYEDILKDISEMMKLKSHTRVKDLFTKDGTKVGGMSQLFHGPQTYFA 317


>SB_57479| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 939

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +1

Query: 121 VRKVFTSSGTQVTALHQFFDEEDVFFAYGNERVNQEDFELEFEEKKPYPSAEK 279
           + +V   S T    + +FFDE    F+Y N   +  + E  F  K   PSA K
Sbjct: 350 LERVKNGSCTIPKEMDRFFDECYGEFSYSNSDSDDYEVEWMFLNKSAAPSARK 402


>SB_35429| Best HMM Match : Laminin_EGF (HMM E-Value=5.3e-17)
          Length = 218

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 60  PDTRACLGCDHGLRETRYGMCKESFH 137
           P+T  C+ CDH     R   C   F+
Sbjct: 32  PETGKCINCDHNTAGDRCEKCASGFY 57


>SB_58206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 675

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 127 KVFTSSGTQVTALHQFFDEEDVFFAYGNERVNQEDFEL-EFEEK-KPYPSAEKLP 285
           +    SG+  T +H+  D+E++    G+ R  +E  E  E+  K K     E+LP
Sbjct: 354 RAMIESGSYETHMHRTLDDEELLVTPGSARAQREQIERGEYISKPKRLIDEEELP 408


>SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)
          Length = 1098

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 8/30 (26%), Positives = 19/30 (63%)
 Frame = +1

Query: 124 RKVFTSSGTQVTALHQFFDEEDVFFAYGNE 213
           ++VF   G +V  +H+   +++++ +YG E
Sbjct: 555 KRVFLKDGKEVKDIHELEYDQEIWLSYGEE 584


>SB_30274| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00093)
          Length = 142

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 79  LAAITDCVKLDTGCVRKVFTSSGTQVTALHQFFDEEDVFFAYGNERVNQEDFELEF 246
           +A +TDC+K D   V++ F+  G  +  +H     + V    GN      DF  EF
Sbjct: 16  IAQVTDCIKHDYDKVQRPFSEDGGPL-RVH----VDLVVIKIGNLDAQTNDFSFEF 66


>SB_12093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 195 KHIFLVEELMQSCNLSPRRCENFPYTSRIEFHAIRDRSQ 79
           KH+ L+ EL   C  + +RC +   T  +E  A+RD S+
Sbjct: 71  KHLILIYELYIICARALQRCRS--DTMPLELSALRDWSE 107


>SB_35793| Best HMM Match : rve (HMM E-Value=4.3)
          Length = 193

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +1

Query: 94  DCVKLDTGCVRKVFTSSGTQ--VTALHQFFDEEDV-FFAYGNERVNQ 225
           DCV    GC  K+ T  GT+  V A  Q    +D+  + YG    NQ
Sbjct: 126 DCVMDFNGCPEKLRTDCGTENRVMAAMQCTLRDDIQAYKYGTSPANQ 172


>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1780

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 166 HQFFDEEDVFFAYGNERVNQEDFELEFEEKKPYPSAEKLPLQE 294
           H   +EE++  A    RVN++DFE E +EK+     E +P  E
Sbjct: 58  HLIMNEEEIAQA---TRVNRKDFESEGKEKR---EEESIPRSE 94


>SB_46713| Best HMM Match : GrpE (HMM E-Value=1.7)
          Length = 420

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
 Frame = +1

Query: 10  IKTTFQVCRLLLNKRNSPTLEHALAAITDCVKLDTGCVRKVFTS----SGTQVTALHQFF 177
           I + F V  +  N    P    A   +  CV+L +GC  +  T     S ++  ++   F
Sbjct: 153 IYSIFAVYDIYKNDSPQPWPWWAFQTLFRCVELASGCTMEYLTRQRSISESEELSVSSSF 212

Query: 178 DEEDVFFAYGNERVNQEDFELEFEEKKPYPSAEK 279
           D E       +E ++ E F    E   P P+ E+
Sbjct: 213 DSESELLESQHELLDSE-FHGYDESLDPVPNEEE 245


>SB_37465| Best HMM Match : UPF0075 (HMM E-Value=1.2)
          Length = 336

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 129 FPYTSRIEFHAIRDRSQGMLECRAI 55
           FP   R+  H+ R R  G ++C+A+
Sbjct: 295 FPGEKRVAAHSSRSRVLGFVKCKAV 319


>SB_45192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = +1

Query: 178 DEEDVFFAYGNERVNQEDFELEFEEKK 258
           ++ DVFF+ GN ++ Q  F ++++ ++
Sbjct: 357 EDGDVFFSGGNHKLGQVHFTVQYDIRR 383


>SB_18299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 195 KHIFLVEELMQSCNLSPRRCENFPYTSRIEFHAIRDRSQGM--LECRAI 55
           + IFLV EL++  +L     E   YT     H +RD +  +  L C +I
Sbjct: 89  REIFLVMELVKGGDLFEAIVEATKYTEVHASHMVRDLASALDYLHCNSI 137


>SB_8286| Best HMM Match : AT_hook (HMM E-Value=0.98)
          Length = 506

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 166 HQFFDEEDVFFAYGNERVNQEDFELEFEEKKPYPSAEKLPLQEV 297
           H+   E+D F+   ++  + E+F L   EK    S  KLP ++V
Sbjct: 342 HKVQHEKDKFWGLISDSEDDEEFNLTVIEKYGRRSRPKLPKRKV 385


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,167,734
Number of Sequences: 59808
Number of extensions: 166283
Number of successful extensions: 430
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)