Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0513.Seq
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   4.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   7.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   7.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   7.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    20   7.6  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +3

Query: 66  TRACLGCDHGLRETRYGMCKES 131
           T  CLGC     + +YG+   S
Sbjct: 33  TSYCLGCGDSCHKCKYGIAMSS 54


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.6 bits (41), Expect = 4.3
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 140 DVKTFLTHPVSSFTQSVIA 84
           D +T   HP+SSF +  ++
Sbjct: 387 DDRTLFFHPMSSFREFAVS 405


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 189 CVFCIWQ 209
           C FCIW+
Sbjct: 187 CYFCIWK 193


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 189 CVFCIWQ 209
           C FCIW+
Sbjct: 220 CYFCIWK 226


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = +3

Query: 189 CVFCIWQ 209
           C FCIW+
Sbjct: 273 CYFCIWK 279


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 164 RAVT*VPDDVKTFLTHPVSSF 102
           R V  +PD ++ +LT  VS +
Sbjct: 327 RMVIILPDGIRNYLTKFVSEY 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,959
Number of Sequences: 438
Number of extensions: 1586
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)