Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0513.Seq
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52460.1 68418.m06509 F-box family protein contains F-box dom...    28   1.0  
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)...    27   1.8  
At1g54920.2 68414.m06269 expressed protein                             26   5.4  
At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12) ...    25   7.1  
At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12) ...    25   7.1  
At5g06590.1 68418.m00744 expressed protein                             25   7.1  
At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative ...    25   7.1  
At1g48310.1 68414.m05396 SNF2 domain-containing protein / helica...    25   7.1  
At1g31140.1 68414.m03810 MADS-box protein (AGL63) similar to gb|...    25   7.1  
At3g26000.1 68416.m03239 F-box family protein contains Pfam PF00...    25   9.4  
At3g11910.1 68416.m01460 ubiquitin-specific protease, putative s...    25   9.4  

>At5g52460.1 68418.m06509 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 37  LLLNKRNSPTLEHALAAITDCVKLDTGCVRKVFTSSGTQVTALHQFFDEEDVFFAY-GNE 213
           L+LN  NSP L     AIT  + +D        T+ GT    L    DEE V+  Y GNE
Sbjct: 247 LILN--NSPKLR--FLAITSVMDIDPEISHCHGTNQGTVPRCLSAHLDEEFVWHGYRGNE 302

Query: 214 RVNQ 225
              Q
Sbjct: 303 EETQ 306


>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
           identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
          Length = 626

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
 Frame = +1

Query: 4   T*IKTTFQVCRL------LLNKRNSPTLEHALAAITDCVKLDTGCVRKVFTSSGTQVTAL 165
           T + +  ++CR+      L +  ++  + +ALA + + +     C+ K F +   + TA+
Sbjct: 138 TEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIPKCFAAGVLEPTAV 197

Query: 166 HQ-----FFDEEDVFFAYGNE 213
            +       DE D+  +YG E
Sbjct: 198 SESLSILVLDEADLLLSYGYE 218


>At1g54920.2 68414.m06269 expressed protein
          Length = 890

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 58  SPTLEHALAAITDCVK--LDTGCVRKVFTS---SGTQVTALHQFFDEEDVFFAY 204
           +PT  + LA + +C+K  L +G V  +  S   S  Q+    ++ +E D F  Y
Sbjct: 775 APTSSNVLAVLDECLKLWLSSGLVEALLNSHDDSADQLLESIKYINEVDAFTLY 828


>At5g06600.2 68418.m00746 ubiquitin-specific protease 12 (UBP12)
           almost identical to ubiquitin-specific protease 12
           GI:11993471 [Arabidopsis thaliana], one amino acid
           difference
          Length = 1115

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 187 DVFFAYGNERVNQEDFELEFEEKKPYPSAEKLP 285
           D ++ + +ERV +ED +   EE+  Y   E+LP
Sbjct: 465 DQWYKFDDERVTKEDLKRALEEQ--YGGEEELP 495


>At5g06600.1 68418.m00745 ubiquitin-specific protease 12 (UBP12)
           almost identical to ubiquitin-specific protease 12
           GI:11993471 [Arabidopsis thaliana], one amino acid
           difference
          Length = 1116

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 187 DVFFAYGNERVNQEDFELEFEEKKPYPSAEKLP 285
           D ++ + +ERV +ED +   EE+  Y   E+LP
Sbjct: 466 DQWYKFDDERVTKEDLKRALEEQ--YGGEEELP 496


>At5g06590.1 68418.m00744 expressed protein 
          Length = 314

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 178 DEEDVFFAYGNERVNQEDFELE 243
           DEE VF A+G+E     D +LE
Sbjct: 113 DEESVFGAFGHEASKHSDDDLE 134


>At4g11130.1 68417.m01805 RNA-dependent RNA polymerase, putative
           similar to RNA-directed RNA polymerase [Lycopersicon
           esculentum] gi|4038592|emb|CAA71421
          Length = 1133

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 99  RETRYGMCKESFHIVW--DSSYSSASILRRGRCVFCI 203
           +  RY  CKE F  +W   + +S +  +    C FC+
Sbjct: 204 KSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTC-FCL 239


>At1g48310.1 68414.m05396 SNF2 domain-containing protein / helicase
           domain-containing protein contains similarity to
           DNA-dependent ATPase A GI:6651385 from [Bos taurus]};
           contains PFam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2
          Length = 673

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 10  IKTTFQVCRLLLNKRNSPTLEHALAAITDCVK--LDTGCVRKVFTSSGTQVTALHQFFDE 183
           IK+   + + L+NK  + +    + A+ D ++  ++ GC   VF    + +  LHQF  +
Sbjct: 447 IKSLKFIEKNLINKIYTDSAVAKIPAVLDYLENVIEAGCKFLVFAHHQSMLEELHQFLKK 506

Query: 184 EDV 192
           + V
Sbjct: 507 KKV 509


>At1g31140.1 68414.m03810 MADS-box protein (AGL63) similar to
           gb|Y15008 M79 protein (MADS box) from oryza sativa and
           contains SRF transcription factor domain PF|00319
          Length = 213

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +1

Query: 28  VCRLLLNKRNSPTLEHALAAITDCVKLDTGCVRKV 132
           + R    K    T EH+  + +DCVK     +R++
Sbjct: 68  IMRYQKEKEGQTTAEHSFHSCSDCVKTKESMMREI 102


>At3g26000.1 68416.m03239 F-box family protein contains Pfam
           PF00646: F-box domain; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 453

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 141 RCENFPYTSRIEFHAIRDRSQGMLECRAITFIQQ*PTHLKRC 16
           +C+NF           + + +G  ECRA +   Q   H  RC
Sbjct: 384 KCQNFKLVYDCPAEDCKGKKKGSEECRACSLCIQRCYHCGRC 425


>At3g11910.1 68416.m01460 ubiquitin-specific protease, putative
           strong similarity to ubiquitin-specific protease 12
           (UBP12) [Arabidopsis thaliana] GI:11993471; contains
           Pfam profiles PF00443: Ubiquitin carboxyl-terminal
           hydrolase, PF00917: MATH domain
          Length = 1115

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 187 DVFFAYGNERVNQEDFELEFEEKKPYPSAEKLP 285
           D ++ + +ERV +ED +   EE+  Y   E+LP
Sbjct: 465 DQWYKFDDERVTKEDVKRALEEQ--YGGEEELP 495


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,321,107
Number of Sequences: 28952
Number of extensions: 114136
Number of successful extensions: 333
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)