Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0512.Seq
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   1.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   7.3  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   7.3  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   9.7  

>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 181 AVLRSSVCLGQLSSEMAYKTASFFKRFDSLPVP 279
           A L+SS C   LSS  +    SF    D  P+P
Sbjct: 26  ATLQSSACTDDLSSCWSEDMGSFSLPLDLEPLP 58


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 607 VSRLLALXDPLCAPSXLARGQG 672
           V  LL   +PLC    LA G G
Sbjct: 106 VKPLLITDEPLCPDGSLACGDG 127


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 467 LQKKG*KRKSVKENKSRELRGGIMYYSC 550
           L+K+G  R++ K   S   +G +  Y+C
Sbjct: 28  LRKQGVPREATKITLSSLAKGSLKQYTC 55


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -1

Query: 641 HKGSXNASSRLTAATCSPTIVLQARY 564
           HK   +   +L  +TC   ++L++R+
Sbjct: 202 HKKFSSIQMQLKQSTCEAVMILRSRF 227


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,811
Number of Sequences: 336
Number of extensions: 3554
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)