Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0512.Seq
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    27   2.6  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    26   4.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   6.0  

>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 342 PARHTSHDSVTLI*CHN-GSHL 404
           PA HT HDS TL   HN G+H+
Sbjct: 157 PAEHTRHDSKTLGLNHNQGAHI 178


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 510 KAVNCEVGLCITAATASSVTGLQHDCRRTGCSG 608
           KA N E GL      ASS+   QH CR     G
Sbjct: 773 KAENRENGLRSAGELASSINETQHGCRAVPLDG 805


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = +3

Query: 540 ITAATASSVTGLQHDCRRTGCSGEPTAC 623
           + A     + GL HDC +  C     AC
Sbjct: 226 VVAHEIGHILGLIHDCNKKSCGDHSEAC 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,643
Number of Sequences: 5004
Number of extensions: 52718
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)