Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0512.Seq
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)                         31   0.90 
SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_22170| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)
          Length = 459

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 32/96 (33%), Positives = 43/96 (44%), Gaps = 2/96 (2%)
 Frame = +3

Query: 318 RRVCDAPRPARHTSHDSVTLI*CHNGSHLATLRF*KKKSADGNSG-GQEGGSKKKDENEN 494
           RR+   P+P +  S DS      H   H  T    +  + DGN    +EG S K DE+EN
Sbjct: 46  RRLPPRPQPIKPASKDSDDDTGSHTSGHENT----EDDTDDGNDDDNKEGSSGKDDESEN 101

Query: 495 Q-LKRTKAVNCEVGLCITAATASSVTGLQHDCRRTG 599
           + +   KA+  E     +A T   V G Q   RR G
Sbjct: 102 EKIIVPKALGNE-----SAVTGQEVFGFQTP-RRAG 131


>SB_45345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2346

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 432  SADGNSGGQEGGSKKKDENENQLKRTKAVNCEVGLCITAATASSVTGLQHDCRRTGCSGE 611
            +A GN+G  +G S      +N  KRT+ V+ E  + I   T ++    Q D   + C+  
Sbjct: 1253 NAHGNTGYDQGSSITNKSYQNNPKRTQEVHDEASIKIPTKTFANG---QQDIAFSTCTAS 1309

Query: 612  PT 617
            P+
Sbjct: 1310 PS 1311


>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 122 FYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSK 256
           FYY+H+ S      L++  +    P+FA +  + +++ +LP F K
Sbjct: 103 FYYDHLMSRDGSKPLRVRSMVGLVPLFACLVLEDEFVQKLPGFKK 147


>SB_22170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
 Frame = -3

Query: 474 FWSHPPALRCFHRPTFFSKTVVLRG----GYHCDIRSKSLNRVTYVLP 343
           FW HP      + PT  ++T  L G    G   D  ++SL R + VLP
Sbjct: 336 FWDHPWGALSINTPTLVTQTGFLDGISDSGLLTDTHTRSLFRDSAVLP 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,216,805
Number of Sequences: 59808
Number of extensions: 454907
Number of successful extensions: 1700
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1697
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)