Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0512.Seq
         (698 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68370.1 68414.m07809 gravity-responsive protein / altered re...    32   0.42 
At2g17705.1 68415.m02051 expressed protein                             29   3.9  
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha...    28   6.8  

>At1g68370.1 68414.m07809 gravity-responsive protein / altered
           response to gravity protein (ARG1) identical to Altered
           Response to Gravity [Arabidopsis thaliana] GI:4249662;
           contains Pfam profile PF00226 DnaJ domain
          Length = 410

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 6/119 (5%)
 Frame = +3

Query: 159 VCYK-YEDCGPPLQCLPRSAF-KRNGLQDCQFFQKVRFATCAVPALVLNRVHRPVRRVCD 332
           +C K YED    L+ +      KRN L+  QF  + R A       V NR +   ++  D
Sbjct: 282 LCAKTYEDTTEKLKEIEAQILRKRNELR--QFETEYRKALARFQE-VTNR-YTQEKQTVD 337

Query: 333 APRPARHTSHDSVTLI*CHNGSHLATLRF*K----KKSADGNSGGQEGGSKKKDENENQ 497
                R T H + +++   +G++L+     K    +   DG+S G+EGG++ +D+++ +
Sbjct: 338 ELLKQRDTIHSTFSVVKTPSGNNLSNGSSSKAQGDESKGDGDSAGEEGGTENRDKSKRK 396


>At2g17705.1 68415.m02051 expressed protein
          Length = 135

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 126 TTIMCTPCGPMVCYKYEDCGPPL 194
           T I CT C  ++ Y Y+D GPPL
Sbjct: 72  TKIKCTSCNHLIGYIYDD-GPPL 93


>At5g40820.1 68418.m04956 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            similar to Atr protein [Xenopus laevis] GI:11385422;
            contains Pfam profiles PF00454 Phosphatidylinositol 3-
            and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
          Length = 2702

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 430  SRPMETAEGRRVAPKKRMKTKIS*REQKP*IARWDYVLQLPL 555
            S  ++++ GR+VAPK + +   S  EQ   + +  YVL+L L
Sbjct: 1599 SSSLQSSGGRQVAPKSKDQVSNSTTEQDHLLVQCKYVLELLL 1640


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,598,910
Number of Sequences: 28952
Number of extensions: 300268
Number of successful extensions: 885
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)