Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0511.Seq
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    67   3e-12
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    63   4e-11
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    62   7e-11

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 28/45 (62%), Positives = 36/45 (80%)
 Frame = +3

Query: 372 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 506
           + RK++QL RL QINNGVFV+ NKAT  ML++ EPY+ +G PNLK
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLK 150



 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 29/48 (60%), Positives = 34/48 (70%)
 Frame = +1

Query: 256 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 399
           ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 67  EREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 21/34 (61%), Positives = 28/34 (82%)
 Frame = +2

Query: 488 GIPQLKEVRELVYKRGFAKLSGQRIPITSNSIVE 589
           GIP LK VREL+YKRGF K++ QRI ++ N+I+E
Sbjct: 145 GIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIE 178



 Score = 31.9 bits (69), Expect = 0.090
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 86  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 250
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  EYR
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYR 64



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 610 TFICVEDLIHEIFTVG 657
           + + +EDLIHEI+TVG
Sbjct: 185 SILSIEDLIHEIYTVG 200


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 28/44 (63%), Positives = 34/44 (77%)
 Frame = +3

Query: 372 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNL 503
           ++RKVL+L RL +INN VFVR NKA   MLRI EPY+ +G PNL
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNL 147



 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +1

Query: 253 QERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 399
           +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 64  RERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 20/35 (57%), Positives = 29/35 (82%)
 Frame = +2

Query: 488 GIPQLKEVRELVYKRGFAKLSGQRIPITSNSIVEK 592
           GIP L  VREL+YKRGF K++GQRI ++ N+++E+
Sbjct: 143 GIPNLHSVRELIYKRGFGKINGQRIALSDNALIEE 177



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 107 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIR 256
           PE +LK            ++  + ++ +  K ++E FKRAE ++  YR R
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQR 64



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 616 ICVEDLIHEIFTVG 657
           I +ED+IHEI+ VG
Sbjct: 185 ISIEDIIHEIYNVG 198


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 28/48 (58%), Positives = 35/48 (72%)
 Frame = +1

Query: 256 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 399
           ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 66  EREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 25/45 (55%), Positives = 34/45 (75%)
 Frame = +3

Query: 372 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 506
           + RK++QL RL QINNG+FV+ NKA   ML++ EPY+ +G PN K
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHK 149



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 21/34 (61%), Positives = 28/34 (82%)
 Frame = +2

Query: 488 GIPQLKEVRELVYKRGFAKLSGQRIPITSNSIVE 589
           GIP  K VREL+YKRGF K++ QRIP++ N+I+E
Sbjct: 144 GIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIE 177



 Score = 31.9 bits (69), Expect = 0.090
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 107 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 250
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYR 63



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +1

Query: 610 TFICVEDLIHEIFTVG 657
           + + VEDLIHEI+TVG
Sbjct: 184 SILSVEDLIHEIYTVG 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,803
Number of Sequences: 5004
Number of extensions: 57578
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)