Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0511.Seq
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       84   9e-17
SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_4273| Best HMM Match : DUF836 (HMM E-Value=2.6)                     28   8.3  
SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_42512| Best HMM Match : Cupin_4 (HMM E-Value=0.037)                 28   8.3  
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)               28   8.3  
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)                   28   8.3  
SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)                      28   8.3  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 38/45 (84%), Positives = 42/45 (93%)
 Frame = +3

Query: 372 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLK 506
           +VRK+LQL RLRQINNGVFVRLNKAT NMLRI +PYIA+GYPNLK
Sbjct: 101 KVRKILQLLRLRQINNGVFVRLNKATANMLRIVQPYIAFGYPNLK 145



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 29/49 (59%), Positives = 36/49 (73%)
 Frame = +1

Query: 253 QERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 399
           +E DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPK  K    L
Sbjct: 61  KEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKVRKILQLL 109



 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 22/35 (62%), Positives = 27/35 (77%)
 Frame = +2

Query: 488 GIPQLKEVRELVYKRGFAKLSGQRIPITSNSIVEK 592
           G P LK VREL+YKRG+ K+  QR+ +T NSIVEK
Sbjct: 140 GYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEK 174



 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 24/61 (39%), Positives = 35/61 (57%)
 Frame = +2

Query: 80  EDSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIRN 259
           +D  K+P VPE++LK             +  L ++     K++EIFKRAE+YVKEYR + 
Sbjct: 3   QDRVKVPRVPETLLKKRKSLEQIKAARAKAQLAQKKLQHGKRKEIFKRAEKYVKEYRQKE 62

Query: 260 V 262
           V
Sbjct: 63  V 63



 Score = 35.9 bits (79), Expect = 0.031
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +1

Query: 616 ICVEDLIHEIFTVGE 660
           ICVEDLIHEIFTVGE
Sbjct: 182 ICVEDLIHEIFTVGE 196


>SB_51354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 554

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 17/50 (34%), Positives = 28/50 (56%)
 Frame = -2

Query: 606 VYGALFSTMLLEVIGIRCPLSLANPRLYTNSRTSLSWGIPKQCKARRYVA 457
           VY  L +T+++  + +R   SLANP LYT  +T     + K+ +  R +A
Sbjct: 273 VYAVLPTTVIILTLFLRFLSSLANPLLYTFFKTDFQLALKKRNERIRRIA 322


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 278 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 415
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_5975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 526 QTWIRQAEWTTYTNHFQQHC*EEGSINTTFICVEDLIHEIFTVG 657
           QT +   E+ T  +H+   C  E    +   C E+L+H++   G
Sbjct: 77  QTRLLMVEYDTSLSHWVSQCPSEPETQSMSFCSEELMHKLRKAG 120


>SB_4273| Best HMM Match : DUF836 (HMM E-Value=2.6)
          Length = 217

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = -2

Query: 693 PTGKLLAYWNFFSNSEDL----MDEVLNTDKCCVYGALFSTMLLEVIGIRCPLSLANPRL 526
           P   +L     F N+E L    +D+ L   K C++G +   M+ E + + C  + A  RL
Sbjct: 88  PVRNILYERYIFHNTEQLAHESIDQFLQLAKPCLFGTIEDEMVRERLVLGCKDTAARTRL 147

Query: 525 YTNSRTSL 502
           +      L
Sbjct: 148 FREKECCL 155


>SB_43688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 654 NSEDLMDEVLNTDKCCVYGALFSTML 577
           N+E + D   NTDKCC  G+  + ML
Sbjct: 657 NNECVKDNQCNTDKCCSKGSSETPML 682


>SB_42512| Best HMM Match : Cupin_4 (HMM E-Value=0.037)
          Length = 204

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 666 NFFSNSEDLMDEVLNTDKCCVYGALFSTMLLEVI 565
           +FF N  +    V+N +    YGALFS   LEV+
Sbjct: 59  DFFENYWEKKPLVINREDSEFYGALFSKAFLEVL 92


>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
          Length = 310

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 331 PIWLPRERSSCHDCVLVWLV*FHHVPD 251
           P+  P E S C  CVL WL  ++  P+
Sbjct: 28  PLMAPCEHSYCSACVLGWLTHYNTCPE 54


>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
          Length = 147

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +1

Query: 235 RQGIPHQERDEIRLARQ---ARNRGNYYVPGEAKLAFVIRIRGINQVSPKS 378
           ++GIP  ++  I   +Q    R   +Y +  E+ L  V+R+RG  Q+S K+
Sbjct: 33  KEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQISVKA 83


>SB_1091| Best HMM Match : Cupin_4 (HMM E-Value=0)
          Length = 584

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 666 NFFSNSEDLMDEVLNTDKCCVYGALFSTMLLEVI 565
           +FF N  +    V+N +    YGALFS   LEV+
Sbjct: 59  DFFENYWEKKPLVINREDSEFYGALFSKAFLEVL 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,462,390
Number of Sequences: 59808
Number of extensions: 421869
Number of successful extensions: 862
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)