Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0510.Seq
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 28 0.34
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 27 0.45
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 27 0.78
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac... 25 2.4
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 3.1
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 3.1
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 24 4.2
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 23 7.3
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 23 7.3
SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|ch... 23 9.6
SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6 |Schizosac... 23 9.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 9.6
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 23 9.6
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 27.9 bits (59), Expect = 0.34
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 3 ELDERALDALKEFPSDGALSVLGQFLDS-NLEHVSNKS 113
EL+E LDAL++ D A SVL + S N E + S
Sbjct: 259 ELNEEQLDALRKKDKDTAASVLAELFGSENTEEIDTVS 296
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 27.5 bits (58), Expect = 0.45
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +2
Query: 8 GRACSRCLKRISIRRC 55
GR CS CLKR +I+ C
Sbjct: 36 GRPCSNCLKRSTIQSC 51
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 26.6 bits (56), Expect = 0.78
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -2
Query: 133 ITPHKKALLLDTCSRFESKNCPRTLKAPSDGNSFKASRARSS 8
++PH+++LL RT +PS NS ++ + SS
Sbjct: 439 LSPHERSLLEQLADALNDSTARRTQSSPSGTNSSTSTSSTSS 480
>SPBC1734.09 |||NST UDP-N-acetylglucosamine
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.0 bits (52), Expect = 2.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 18 ALDAL-KEFPSDGALSVLGQFLDSNLE 95
AL+AL +EFPS G L QF+ +E
Sbjct: 19 ALEALVREFPSSGILITFSQFILITIE 45
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 24.6 bits (51), Expect = 3.1
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 18 ALDALKEFPSDGALSVLGQFLDSNLEHVSNKSAFL 122
A+D +KEF +D + + L +L+ +S S+F+
Sbjct: 831 AIDKIKEFFADKDTKLYERALQQSLDTISANSSFI 865
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 24.6 bits (51), Expect = 3.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +3
Query: 126 GVMKTYRQKSRAGVPGAPA 182
G+++ RQ+S GV G PA
Sbjct: 794 GILQVLRQRSTEGVDGVPA 812
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 24.2 bits (50), Expect = 4.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 238 WPEPVTVRCDYRSTQVPKS 294
+PEPVTV D++S + KS
Sbjct: 441 FPEPVTVLDDHKSRNLTKS 459
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 23.4 bits (48), Expect = 7.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -2
Query: 250 PVRAKICFIFSSSGPLTCTVGVRAGA 173
P+R +IC + ++ GP+T +AG+
Sbjct: 487 PLRLEICDVLTNIGPITDFAVGKAGS 512
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +3
Query: 45 SDGALSVLGQFLDSNLEHVSNKSAFLCGVM 134
+D +S +GQ + N+ H + C V+
Sbjct: 148 TDKGVSAMGQVISLNVRHSERRPIIYCDVL 177
>SPBC32F12.10 |||phosphoglucomutase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +3
Query: 33 KEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYR 146
+ P+ GA+ +G++ N+ V F C + R
Sbjct: 322 RSMPTSGAIDRVGKYKGKNVYEVPTGWKFFCNLFDAKR 359
>SPAC29A4.07 |srb6|med22|mediator complex subunit Srb6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 136
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 189 PTVQVKGPDEEKIKQILAR 245
PTV PD EK+K+ L +
Sbjct: 91 PTVDYSEPDLEKVKRTLTK 109
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect = 9.6
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 93 RDLNLKIVQEHL-KHRRMEILLRHLEH 16
R NLK +E +HRR+ ++ H EH
Sbjct: 1369 RSDNLKSEEEEASQHRRLNLVNNHKEH 1395
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 23.0 bits (47), Expect = 9.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +3
Query: 24 DALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGV 131
DAL E S G L V + L N H+S + + GV
Sbjct: 793 DALLERSSHGVLPVQSKMLLYNSNHISCPLSSIKGV 828
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,253,014
Number of Sequences: 5004
Number of extensions: 22102
Number of successful extensions: 53
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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