Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0510.Seq
(299 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 29 0.67
01_01_0635 - 4795434-4795461,4795897-4797365 28 1.2
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557... 27 2.7
02_05_0887 + 32516255-32517292 27 2.7
08_02_1146 + 24678142-24678258,24678550-24678587,24678997-246790... 27 3.6
03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330 27 3.6
08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736 26 4.7
01_06_0922 - 33022709-33023545 26 4.7
06_03_0215 - 18080286-18080914,18080925-18080997 26 6.3
02_01_0549 - 4038699-4038753,4039225-4039514,4039673-4039970,404... 26 6.3
01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638 26 6.3
09_02_0492 - 9866492-9866848 25 8.3
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 25 8.3
05_07_0257 + 28719980-28720220,28721412-28721455,28722521-287225... 25 8.3
03_02_0149 + 5933134-5933207,5935039-5935267,5935370-5935468,593... 25 8.3
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 29.1 bits (62), Expect = 0.67
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 3 ELDERALDALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRQKS 155
++D + +L E P A++VL QFL S + NK + ++ Y+ ++
Sbjct: 715 DIDIHCIRSLNELPEKAAVAVLNQFLISGADK-HNKGDYFASLIAKYQAET 764
>01_01_0635 - 4795434-4795461,4795897-4797365
Length = 498
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 121 KKALLLDTCSRFESKNCPRTLKAPSDGNSFKASRARS 11
KK +LLD C+ + +K P T + S+G SF +S S
Sbjct: 446 KKKVLLD-CTGYSNKGSPSTARRMSEGLSFISSEMPS 481
>04_01_0422 +
5573833-5574647,5575577-5575692,5576922-5577130,
5579676-5579795,5581616-5581744,5581828-5581953,
5582945-5583000,5583084-5583183,5585155-5585272,
5585374-5585583,5585902-5586226,5587094-5587187,
5588021-5588129,5588246-5588514,5589153-5589280,
5589983-5590217,5590858-5591046,5591326-5591609,
5591698-5591890,5592040-5592207,5592429-5592514,
5594391-5594550
Length = 1412
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -2
Query: 106 LDTCSRFESKNCPRTLKAPSD 44
LD SR ESK CP L P D
Sbjct: 524 LDALSRCESKTCPSELITPPD 544
>02_05_0887 + 32516255-32517292
Length = 345
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 5 VGRACSRCLKRISIRRCFKCSWTIFRFKSRTCIQ*KCFFVWSYEDL 142
V AC C ++ + + + K RTC+Q C FV +Y++L
Sbjct: 128 VDLACPLCRGKVKGWTIVEPARSYLNGKRRTCMQDGCSFVGTYKEL 173
>08_02_1146 +
24678142-24678258,24678550-24678587,24678997-24679012,
24679874-24680002,24680073-24680229,24680337-24680530,
24680668-24680916,24681196-24681309,24681949-24681990,
24682402-24682572,24682932-24683104,24683378-24683624,
24684046-24684130,24684401-24684510,24684714-24684977,
24685885-24685950,24686431-24686525,24686780-24686858
Length = 781
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 120 LCGVMKTYRQKSRAGVPGAPALTPTVQVKGPDEEKIK 230
L GV++++ +AGVP P P + + D++ I+
Sbjct: 159 LSGVLRSFLASGQAGVPFQPVPVPALGLSESDKQCIR 195
>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
Length = 380
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 221 EDKANLGPNRLPLDVTTGQRKYPSP 295
++ A +GP R PLD T Q SP
Sbjct: 113 DEDATIGPERRPLDALTEQELVESP 137
>08_02_1336 - 26233081-26233312,26233814-26234672,26235218-26236736
Length = 869
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 66 LGQFLDSNLEHVSNKSAFLCGVMKTYRQKSRAG 164
+GQF+D + E N S L GV++ +R+G
Sbjct: 786 VGQFMDPSSEDKDNSSYHLVGVIEHIGPSTRSG 818
>01_06_0922 - 33022709-33023545
Length = 278
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 153 SRAGVPGAPALTPTVQVKGPDEEKIKQILART 248
SR P A A P P+EEK+K++L+ T
Sbjct: 20 SRRCKPPAEARDPPPPPPLPEEEKVKEVLSET 51
>06_03_0215 - 18080286-18080914,18080925-18080997
Length = 233
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 136 FITPHKKALLLDTCSRFESKNCPRTLKAPS 47
F+ P++ A L + RF CP + PS
Sbjct: 99 FVVPNRAAAFLRSGRRFRRPRCPGVSRGPS 128
>02_01_0549 -
4038699-4038753,4039225-4039514,4039673-4039970,
4040779-4040849,4040966-4041079,4041166-4041240,
4041347-4041405,4041870-4041912
Length = 334
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 82 SKNCPRTLKAPSD 44
SKNC RTLK P D
Sbjct: 89 SKNCRRTLKVPKD 101
>01_07_0173 + 41708463-41708709,41709285-41709606,41710389-41710638
Length = 272
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 115 ALLLDTCSRFESKNCPRTLKAPSDGNSF 32
A+LL+ R E +C L AP+DG F
Sbjct: 25 AVLLNPADREEWHDCLPDLSAPADGEDF 52
>09_02_0492 - 9866492-9866848
Length = 118
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 70 DNF*IQISNMYPIKVLFCVEL*RPIDRKVGRAF 168
DNF + ++ +P V FCV L I + R F
Sbjct: 34 DNFSVSLAPPHPSHVSFCVALFGAIASSIARRF 66
>08_02_1442 + 27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +2
Query: 23 RCLKRISIRRCFKC 64
RCLKR+ I RC +C
Sbjct: 992 RCLKRLIIERCPRC 1005
>05_07_0257 +
28719980-28720220,28721412-28721455,28722521-28722590,
28722693-28722816,28723420-28724060,28725100-28725364,
28725434-28725713,28726042-28726209,28726867-28727358,
28727432-28727689
Length = 860
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = +3
Query: 162 GVPGAPALTPTVQVKGPDEEKIKQILARTG 251
G+PG P++ V++ P + ++ + TG
Sbjct: 194 GMPGRPSMADIVKMGKPQAKPVRSVACNTG 223
>03_02_0149 +
5933134-5933207,5935039-5935267,5935370-5935468,
5935582-5935616,5935694-5935769,5936552-5936662,
5937001-5937087,5937302-5937395,5937489-5937606,
5938047-5938542,5939263-5939298,5940047-5940578,
5940668-5940792
Length = 703
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +3
Query: 162 GVPGAPALTPTVQVKGPDEEKIKQILARTGYR*M*LQVNASTQVRC 299
G P+L V+GP+++ I I+ TG + + T V C
Sbjct: 220 GFHADPSLNVAAWVRGPNDQYINHIMNETGVTVVLRGKGSGTPVNC 265
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,567,151
Number of Sequences: 37544
Number of extensions: 159967
Number of successful extensions: 432
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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