Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0510.Seq
         (299 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)             108   9e-25
SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   2e-14
SB_7319| Best HMM Match : SRCR (HMM E-Value=0)                         28   1.2  
SB_20266| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)                 27   2.1  
SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)                  27   2.1  
SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.8  
SB_28538| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)              26   6.5  
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)                       26   6.5  
SB_55817| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.6  
SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.6  
SB_755| Best HMM Match : MIT (HMM E-Value=0.055)                       25   8.6  
SB_48833| Best HMM Match : MgtE_N (HMM E-Value=0.34)                   25   8.6  
SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   8.6  

>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score =  108 bits (259), Expect = 9e-25
 Identities = 54/84 (64%), Positives = 62/84 (73%)
 Frame = +3

Query: 3   ELDERALDALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPA 182
           ELD+RALDAL+EF  +GAL VL QF  S+L HV NKSAFLCGVMKTYR+K+R    G   
Sbjct: 40  ELDDRALDALREFNEEGALEVLNQFASSDLSHVQNKSAFLCGVMKTYREKNRMRRDGQ-- 97

Query: 183 LTPTVQVKGPDEEKIKQILARTGY 254
             PT  +KGPDE KIK +L RTGY
Sbjct: 98  -DPTAGLKGPDEAKIKALLDRTGY 120



 Score = 31.9 bits (69), Expect = 0.099
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 203 QGPRRGEDKANLGPNRLPLDVTTGQRKYPSP 295
           +GP   + KA L      LD+TTGQRKY  P
Sbjct: 104 KGPDEAKIKALLDRTGYTLDITTGQRKYGGP 134


>SB_31413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 40/83 (48%), Positives = 55/83 (66%)
 Frame = +3

Query: 6   LDERALDALKEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPAL 185
           LD+ AL  LKEFP + AL +L QF  SNL +V+NKSAFLCG+M++YR+K + G      L
Sbjct: 46  LDDLALSVLKEFPENNALEILNQFSRSNLANVNNKSAFLCGIMRSYREKMKLG-----GL 100

Query: 186 TPTVQVKGPDEEKIKQILARTGY 254
           +   QV  P+  KI ++L+R  Y
Sbjct: 101 S---QVLTPEPAKISELLSRGIY 120


>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 957

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 109 LLDTCSRFESKNCPRTLKAPSDGNSFKASRARSSNS 2
           LL+ CS   S +C  T  APS   S   +   S+N+
Sbjct: 547 LLNNCSSANSTSCTNTTAAPSSNCSLATNATASANT 582


>SB_20266| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 273 PVVTSNGNRFGPRFALSSPRRGP*P 199
           P V     R  PRFALS  RR P P
Sbjct: 108 PTVRERTKRINPRFALSRTRRTPRP 132


>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
          Length = 878

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 150 KSRAGVPGAPALTPTVQVKGPDEEKIKQI 236
           +S+A V GAP+  P   +KG    K+K++
Sbjct: 593 ESKASVEGAPSANPFKDIKGLGNGKLKEL 621


>SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)
          Length = 444

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 90  LEHVSNKSAFLCGVMK 137
           L+HV  +SAFLCG +K
Sbjct: 289 LQHVDEESAFLCGYLK 304


>SB_28720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 195 VQVKGPDEEKIKQILARTG 251
           +Q+KG +E K+K++LA+ G
Sbjct: 310 IQLKGDEEVKVKELLAKAG 328


>SB_28538| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 224 DKANLGPNRLPLDVTTGQRKYPSP 295
           ++  +GP +LP ++T     YP+P
Sbjct: 137 ERVRVGPTQLPAELTNALADYPTP 160


>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
          Length = 558

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 180 ALTPTVQVKGPDEEKIKQIL 239
           A+ P V +KGPD +K+  IL
Sbjct: 121 AVRPVVLIKGPDAKKLMNIL 140


>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 2682

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +3

Query: 33   KEFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYR 146
            K    DG  +  G++  + L+H  ++  +L G++  YR
Sbjct: 2228 KSKADDGCKNTKGRYATAWLQHKRDRGKYLYGILVAYR 2265


>SB_55817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 54  ALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTVQVK--GPDEEKI 227
           A  + GQ  DS+ E   N+  +   V+   R  S+ G PGAP+L  T + K   P   +I
Sbjct: 475 AHEIAGQRADSSNEQ--NRRRYNQKVL--VRNLSKRGGPGAPSLKKTKRTKQGQPPTRQI 530

Query: 228 KQILAR 245
           +Q  +R
Sbjct: 531 RQDSSR 536


>SB_4546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 514

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 165 VPGAPALTPTVQVKGPDEEKIK 230
           +PG+P   P    K PD++K+K
Sbjct: 284 IPGSPTPLPNSDDKTPDDKKLK 305


>SB_755| Best HMM Match : MIT (HMM E-Value=0.055)
          Length = 146

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +3

Query: 63  VLGQFLDSNLEHVSNKSAFLCGVMKTY 143
           + G++LD N+E V+ +  ++ G+ + Y
Sbjct: 97  IFGRYLDENVEEVTIEDPYIRGIHQIY 123


>SB_48833| Best HMM Match : MgtE_N (HMM E-Value=0.34)
          Length = 192

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 99  HVRDLNLKIVQEHLKHRRMEILLRHL 22
           H     L I+ EHL  R++ IL+ HL
Sbjct: 84  HPTKRQLNILIEHLTKRQLNILIEHL 109



 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 99  HVRDLNLKIVQEHLKHRRMEILLRHL 22
           H+    L I+ EHL  R++  L++HL
Sbjct: 96  HLTKRQLNILIEHLTKRQLNTLIKHL 121


>SB_5819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 165 VPGAPALTPTVQVKGPDEEKIK 230
           +PG+P   P    K PD++K+K
Sbjct: 73  IPGSPTPLPNSDDKTPDDKKLK 94


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,841,025
Number of Sequences: 59808
Number of extensions: 190226
Number of successful extensions: 462
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)