Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0510.Seq
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   5.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   5.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   7.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 9/44 (20%), Positives = 20/44 (45%)
 Frame = +3

Query: 69  GQFLDSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTVQ 200
           G  +  N+E +S+++ + C         +R  +     + PT+Q
Sbjct: 543 GTLIIENVERMSDQATYTCVARNAQGYSARGTLEVQVMVPPTIQ 586


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +2

Query: 62  CSWTIFRFKSRTCIQ*KCFFVWSY 133
           CS+        T +   C F+W+Y
Sbjct: 206 CSFDFLTDDEDTKVFVTCIFIWAY 229


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/24 (29%), Positives = 11/24 (45%)
 Frame = +2

Query: 62  CSWTIFRFKSRTCIQ*KCFFVWSY 133
           CS+        T +   C F+W+Y
Sbjct: 206 CSFDFLTDDEDTKVFVTCIFIWAY 229


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 10/42 (23%), Positives = 18/42 (42%)
 Frame = +3

Query: 108 KSAFLCGVMKTYRQKSRAGVPGAPALTPTVQVKGPDEEKIKQ 233
           K   LC +M+T  +K  + +     ++P         + IKQ
Sbjct: 450 KFMILCNLMRTMNRKQISELESNMQISPNELKPNDKSQVIKQ 491


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,968
Number of Sequences: 438
Number of extensions: 1466
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)