Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0510.Seq
         (299 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78710.1 68414.m09174 expressed protein similar to hypothetic...    30   0.25 
At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger) fa...    27   2.3  
At1g66750.1 68414.m07587 cell division protein kinase, putative ...    27   3.1  
At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containi...    25   7.1  
At5g28920.1 68418.m03569 expressed protein                             25   9.4  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    25   9.4  
At2g36960.2 68415.m04533 myb family transcription factor contain...    25   9.4  
At2g36960.1 68415.m04532 myb family transcription factor contain...    25   9.4  
At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family pr...    25   9.4  
At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family pr...    25   9.4  

>At1g78710.1 68414.m09174 expressed protein similar to hypothetical
           protein GI:3201617 from [Arabidopsis thaliana];
           expression supported by MPSS
          Length = 359

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
 Frame = +3

Query: 54  ALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTVQVKGPD------ 215
           AL+   +++D N++  S    F  GV   +      G PG   L  TV V+GP       
Sbjct: 231 ALTTWSKWIDHNIDP-SKTRVFYQGVSPVHLNGGEWGKPGKTCLGETVPVQGPSYPGRPN 289

Query: 216 --EEKIKQILARTGYR*M*LQVNASTQVR 296
             E  +K ++ R       L V A T++R
Sbjct: 290 EGEAIVKSVIGRMAKPVELLDVTAMTEMR 318


>At1g53190.1 68414.m06028 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHG1a
           GI:3822225 from [Arabidopsis thaliana]; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 494

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 36  EFPSDGALSVLGQFLDSNLEHVSNKSAFLCGVMKTYRQKSRAGVPGAPALTPTV 197
           + PS  +  V+G   D   E  ++   F+     TY++K+  G+PG P    T+
Sbjct: 98  QLPSSSSHGVVGVSPDHEYERNAH---FMDHTRGTYKRKNAEGIPGQPQYLSTL 148


>At1g66750.1 68414.m07587 cell division protein kinase, putative
           similar to cell division protein kinase 7 [Homo sapiens]
           SWISS-PROT:P50613
          Length = 348

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/51 (27%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +3

Query: 21  LDALKEFPSDGALSVLGQFLDSNLEHV-SNKSAFLC-GVMKTYRQKSRAGV 167
           ++ +  FP DG+L ++ +++ ++LE V  +++ FL  G +K+Y   +  G+
Sbjct: 73  VELIDAFPHDGSLHLVFEYMQTDLEAVIRDRNIFLSPGDIKSYMLMTLKGL 123


>At4g21300.1 68417.m03077 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 857

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 133 ITPHKKALLLDTCSRFESKNCPRTL 59
           I P+KK+L L   SRF  +  PR L
Sbjct: 14  IAPYKKSLPLRNSSRFLEETIPRRL 38


>At5g28920.1 68418.m03569 expressed protein 
          Length = 419

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 200 GQGPRRGEDKANLGPNRLPL 259
           G+G   G+ +  LGPNR P+
Sbjct: 347 GKGQEGGQRRLGLGPNRRPI 366


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
            to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
            CREB-binding protein GB:S39162 from [Homo sapiens]
          Length = 1670

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = +2

Query: 47   RRCFKCS--WTIFRFKSRTCIQ*KC 115
            R C  C   W++FR  SR C   +C
Sbjct: 1602 RGCIACKKMWSLFRLHSRNCRDPQC 1626


>At2g36960.2 68415.m04533 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 741

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 108 YWIHVRDLNLKIVQEHLKHRRMEILLRHLEH 16
           +W  +   + K  + HLK RR ++ +  LEH
Sbjct: 128 WWSLLEKYSCKASKLHLKPRRFKLFIEALEH 158


>At2g36960.1 68415.m04532 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 743

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 108 YWIHVRDLNLKIVQEHLKHRRMEILLRHLEH 16
           +W  +   + K  + HLK RR ++ +  LEH
Sbjct: 128 WWSLLEKYSCKASKLHLKPRRFKLFIEALEH 158


>At1g26260.2 68414.m03204 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor GBOF-1
           GI:5923912 from [Tulipa gesneriana]
          Length = 390

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 90  LEHVSNKSAFLCGVMKTYRQKSRAGVPGAPAL 185
           +E  +  S F CG M   +Q+S  GVP +  L
Sbjct: 84  IERAAKFSFFGCGEMMMNQQQSSLGVPDSTGL 115


>At1g26260.1 68414.m03203 basic helix-loop-helix (bHLH) family
           protein similar to bHLH transcription factor GBOF-1
           GI:5923912 from [Tulipa gesneriana]
          Length = 390

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 90  LEHVSNKSAFLCGVMKTYRQKSRAGVPGAPAL 185
           +E  +  S F CG M   +Q+S  GVP +  L
Sbjct: 84  IERAAKFSFFGCGEMMMNQQQSSLGVPDSTGL 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,714,671
Number of Sequences: 28952
Number of extensions: 121650
Number of successful extensions: 280
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)