Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0509.Seq
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 28 1.5
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 2.6
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po... 27 2.6
SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subun... 27 3.4
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 4.5
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo... 26 4.5
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 26 4.5
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 25 7.9
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 25 7.9
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 7.9
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/60 (35%), Positives = 34/60 (56%)
Frame = +3
Query: 327 DKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNELVNFKGEIPEETL 506
+ + ++I I+KSSK+ + QF NS++ SD V L ++ L+ L+ K P ETL
Sbjct: 103 ESHPREIEFSIQKSSKINLHTLSQFVNSKYSSDPQV--LSSIMFLDLLLKKK---PSETL 157
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/39 (28%), Positives = 26/39 (66%)
Frame = +3
Query: 261 NDDFKFKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKV 377
N+ + + E+S+V + K ++K K++I+D+EK++ +
Sbjct: 1593 NNAYTYNEEHSIVYE--DAKLMEKTLKEVIEDLEKNNSL 1629
>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 412
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +3
Query: 276 FKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDK 428
+ +N VVE+K + +D + Q + S+ V+D K +N+R S +
Sbjct: 301 YPTQNQVVEQKQMQQKLDSMSPEWYQAADPSNGVVDGTPKLNSNTRGSSKR 351
>SPCC290.02 |rpc34||DNA-directed RNA polymerase III complex subunit
Rpc34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 342 DIIQDIEKSSKVIDSH-VKQFNNSRFESDKLVEQLQAVDKLNEL 470
D ++ + K++KVI H +KQ NS + D LVE + A +N+L
Sbjct: 3 DQLRTLPKNAKVIYEHCLKQIPNSLSQQD-LVEAIGASISVNDL 45
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +2
Query: 86 RPQKKRVL*EGNLLKNQSRNKLLNLINQTDLNLEDED 196
+P+KK E + K Q +NK++ +N+ ++ +EDE+
Sbjct: 34 KPEKKDDK-EKSSKKVQKKNKVIESLNEMEVEMEDEN 69
>SPAC22F3.12c |rgs1||regulator of G-protein signaling
Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 128 KNQSRNKLLNLINQTDLNLEDEDIL 202
KN S NKL+N IN+ + +++IL
Sbjct: 321 KNVSNNKLINKINEVEKGSTNKEIL 345
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +3
Query: 279 KRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDK 458
K+E ++ +LST ++KY ++ + S+KV ++ + + E K+ + L DK
Sbjct: 532 KKEGDLIFDRLSTNSLNKYLTSLMDGL--SAKVFRTYNASYTMAE-ELKKMPKNLTLADK 588
Query: 459 L 461
+
Sbjct: 589 I 589
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 25.4 bits (53), Expect = 7.9
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 689 LTKYCISFLSPVNHLINP 636
L ++C+SFL+ N++ NP
Sbjct: 613 LCEFCVSFLTQANYIKNP 630
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 16 EEMQKRMEAMKIELINK 66
EE++KR E MK+E +NK
Sbjct: 344 EELRKRYEQMKLEKMNK 360
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 357 IEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLNEL 470
++ S +D+ ++FN+S E DKL + +Q + E+
Sbjct: 3 LKSFSTTLDTLRRRFNDSSSEEDKLEKNIQDETSIKEV 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,667
Number of Sequences: 5004
Number of extensions: 41767
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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