Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0509.Seq
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0384 - 8294914-8297817                                           31   1.2  
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792...    30   1.5  
03_02_0050 + 5272471-5274861                                           30   1.5  
12_01_1050 + 10798692-10798867,10798972-10799169,10799617-108006...    29   4.7  
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132...    29   4.7  
05_01_0448 + 3566151-3567380,3567877-3568188,3568318-3568455           28   8.2  

>09_02_0384 - 8294914-8297817
          Length = 967

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 345 IIQDIEKSSKVIDSHVKQFNNSRFESDKLVEQLQAVDKLN-ELVNFKGEIP 494
           I+QD  K SK +   +  FN SR  SDKL E +   D+ + E+V+  G +P
Sbjct: 88  ILQDYSKRSKHL---ISNFNISRRASDKLEELVDLYDRGSFEVVSVDGPLP 135


>06_03_0038 -
           15778446-15778577,15778685-15779020,15779106-15779225,
           15779280-15779765,15779861-15779994,15780111-15780230,
           15784881-15785018,15785404-15786079,15786179-15786340,
           15786424-15786618,15786839-15787084,15787758-15787952
          Length = 979

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = +3

Query: 264 DDFKFKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDS 386
           D+ K  +++ +V++   T  I  Y K +++DI +  +VIDS
Sbjct: 217 DNLKVPKDSLIVDR-CQTPRIQLYTKQLVEDISQEDRVIDS 256


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = +3

Query: 444 QAVDKLNELVNFKGEIPEETLKN 512
           +A+DKLNELV  KG +P+ET  N
Sbjct: 542 EAIDKLNELVE-KGLVPDETTYN 563


>12_01_1050 +
           10798692-10798867,10798972-10799169,10799617-10800649,
           10800866-10801219
          Length = 586

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/89 (24%), Positives = 41/89 (46%)
 Frame = +3

Query: 210 IFRKFTD*IDNHSGGVNNDDFKFKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSH 389
           I  K +D  +N     N DD  +K    + +K+L  +  DK+ +DI+    K  K   S 
Sbjct: 250 ILLKLSDDENNLRIMSNTDDLVWKIVALINDKELHLRKHDKWSRDIVDPGVKLIKRFMSA 309

Query: 390 VKQFNNSRFESDKLVEQLQAVDKLNELVN 476
             + NN  +   ++   L+A+  L  +++
Sbjct: 310 TTRSNNILWR--EISTSLEAISSLESIID 336


>12_01_0179 -
           1319291-1319332,1319884-1320579,1322759-1323207,
           1323291-1324903,1324991-1325077,1326983-1327251
          Length = 1051

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
 Frame = +3

Query: 237 DNHSGGVNNDDFKFKRENSVVEKKLSTKPIDKYC--KDIIQ----DIEKSSKV--IDSHV 392
           DN +   ++D+   + E++  ++      ID +   KD+I     D++ +SK+  +    
Sbjct: 374 DNLNTSSDDDEDDLEEEDASTDENQLEGKIDDFANWKDVIDLNYLDMDNNSKLEGMMDLQ 433

Query: 393 KQFNNSRFESDKLVEQLQAVD---KLNELVNFKGEIP 494
           +  N  +FE DK +  LQA D   K+ E   F+ ++P
Sbjct: 434 RAKNILKFELDKRLMDLQAADAVQKMEEASRFRVQVP 470


>05_01_0448 + 3566151-3567380,3567877-3568188,3568318-3568455
          Length = 559

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/66 (31%), Positives = 37/66 (56%)
 Frame = +3

Query: 237 DNHSGGVNNDDFKFKRENSVVEKKLSTKPIDKYCKDIIQDIEKSSKVIDSHVKQFNNSRF 416
           DN+ G +++D+F   ++   ++ KL  K  D+Y K+I++  +K  KV D+ +        
Sbjct: 497 DNNDGSLSSDEFALFQKRVELKAKLEDKD-DEY-KEILR--QKLQKVDDTGLIHVYRKNL 552

Query: 417 ESDKLV 434
            SDKLV
Sbjct: 553 -SDKLV 557


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,977,783
Number of Sequences: 37544
Number of extensions: 216848
Number of successful extensions: 559
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)